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1Y9Z
Asym. Unit
Info
Asym.Unit (144 KB)
Biol.Unit 1 (71 KB)
Biol.Unit 2 (72 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF PSYCHROPHILIC SUBTILISIN-LIKE SERINE PROTEASE FROM ANTARCTIC PSYCHROTROPH PSEUDOALTEROMONAS SP. AS-11 AT 0.14 NM RESOLUTION
Authors
:
D. Dong, K. Watanabe
Date
:
16 Dec 04 (Deposition) - 21 Mar 06 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.40
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Subtilisin-Like Alpha/Beta Domain, Insert Beta Barrel Domain, Hydrolase
(Keyword Search:
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Reference
:
D. Dong, K. Watanabe
Crystal Structure Of Psychrophilic Subtilisin-Like Serine Protease From Antarctic Psychrotroph Pseudoalteromonas Sp. As-11 At 0. 14 Nm Resolution
To Be Published
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Hetero Components
(5, 13)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
2a: SODIUM ION (NAa)
2b: SODIUM ION (NAb)
2c: SODIUM ION (NAc)
2d: SODIUM ION (NAd)
3a: PHENYLMETHANESULFONIC ACID (PMSa)
3b: PHENYLMETHANESULFONIC ACID (PMSb)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
5a: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSa)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CA
4
Ligand/Ion
CALCIUM ION
2
NA
4
Ligand/Ion
SODIUM ION
3
PMS
2
Ligand/Ion
PHENYLMETHANESULFONIC ACID
4
SO4
2
Ligand/Ion
SULFATE ION
5
TRS
1
Ligand/Ion
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
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Sites
(13, 13)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:2 , ASP A:39 , ILE A:76 , ASN A:78 , GLU A:80 , VAL A:82
BINDING SITE FOR RESIDUE CA A 603
02
AC2
SOFTWARE
ASP A:404 , LEU A:405 , VAL A:407 , GLY A:409 , ASP A:411 , HOH A:613
BINDING SITE FOR RESIDUE CA A 604
03
AC3
SOFTWARE
GLU B:2 , ASP B:39 , ILE B:76 , ASN B:78 , GLU B:80 , VAL B:82
BINDING SITE FOR RESIDUE CA B 605
04
AC4
SOFTWARE
ASP B:404 , LEU B:405 , VAL B:407 , GLY B:409 , ASP B:411 , HOH B:614
BINDING SITE FOR RESIDUE CA B 606
05
AC5
SOFTWARE
ALA A:169 , TYR A:171 , VAL A:174 , GLN A:195 , NA A:608
BINDING SITE FOR RESIDUE NA A 607
06
AC6
SOFTWARE
VAL A:174 , SER A:176 , GLN A:195 , GLU A:197 , NA A:607
BINDING SITE FOR RESIDUE NA A 608
07
AC7
SOFTWARE
ALA B:169 , TYR B:171 , VAL B:174 , GLN B:195 , NA B:610
BINDING SITE FOR RESIDUE NA B 609
08
AC8
SOFTWARE
VAL B:174 , SER B:176 , GLN B:195 , GLU B:197 , NA B:609
BINDING SITE FOR RESIDUE NA B 610
09
AC9
SOFTWARE
ASP A:162 , SER A:163 , TYR A:192 , HOH A:627 , HOH A:801 , THR B:138 , SER B:268
BINDING SITE FOR RESIDUE SO4 A 612
10
BC1
SOFTWARE
ASN B:50 , SER B:51 , SER B:107 , LYS B:275 , HOH B:785 , HOH B:872 , HOH B:889
BINDING SITE FOR RESIDUE SO4 B 613
11
BC2
SOFTWARE
PHE A:99 , SER A:129 , LEU A:130 , GLY A:131 , ALA A:156 , ASN A:159 , THR A:368 , SER A:369 , HOH A:634
BINDING SITE FOR RESIDUE PMS A 601
12
BC3
SOFTWARE
PHE B:99 , SER B:129 , LEU B:130 , GLY B:131 , ALA B:156 , ASN B:159 , THR B:368 , SER B:369 , HOH B:747
BINDING SITE FOR RESIDUE PMS B 602
13
BC4
SOFTWARE
ASN A:88 , GLN A:89 , ASN A:90 , HOH A:822 , ASN B:49 , ALA B:256 , HOH B:840
BINDING SITE FOR RESIDUE TRS A 611
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1y9za_ (A:)
1b: SCOP_d1y9zb_ (B:)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Subtilisin-like
(227)
Superfamily
:
Subtilisin-like
(227)
Family
:
Subtilases
(190)
Protein domain
:
automated matches
(58)
Pseudoalteromonas sp. [TaxId: 247492]
(2)
1a
d1y9za_
A:
1b
d1y9zb_
B:
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1y9zB01 (B:1-214,B:360-436)
1b: CATH_1y9zA01 (A:1-214,A:360-435)
2a: CATH_1y9zA02 (A:215-359)
2b: CATH_1y9zB02 (B:215-359)
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Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.200, no name defined]
(198)
As-11 (Pseudoalteromonas sp)
(3)
1a
1y9zB01
B:1-214,B:360-436
1b
1y9zA01
A:1-214,A:360-435
Architecture
:
3-Layer(bba) Sandwich
(528)
Topology
:
Glucose Oxidase; domain 1
(52)
Homologous Superfamily
:
[code=3.50.30.30, no name defined]
(6)
As-11 (Pseudoalteromonas sp)
(3)
2a
1y9zA02
A:215-359
2b
1y9zB02
B:215-359
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Pfam Domains
(2, 6)
Info
all PFAM domains
1a: PFAM_PA_1y9zB01 (B:208-348)
1b: PFAM_PA_1y9zB02 (B:208-348)
2a: PFAM_Peptidase_S8_1y9zB03 (B:282-426)
2b: PFAM_Peptidase_S8_1y9zB04 (B:282-426)
2c: PFAM_Peptidase_S8_1y9zB05 (B:282-426)
2d: PFAM_Peptidase_S8_1y9zB06 (B:282-426)
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)
Clan
:
no clan defined [family: PA]
(15)
Family
:
PA
(15)
Pseudoalteromonas sp. AS-11
(2)
1a
PA-1y9zB01
B:208-348
1b
PA-1y9zB02
B:208-348
Clan
:
no clan defined [family: Peptidase_S8]
(104)
Family
:
Peptidase_S8
(104)
Pseudoalteromonas sp. AS-11
(2)
2a
Peptidase_S8-1y9zB03
B:282-426
2b
Peptidase_S8-1y9zB04
B:282-426
2c
Peptidase_S8-1y9zB05
B:282-426
2d
Peptidase_S8-1y9zB06
B:282-426
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Asym.Unit (144 KB)
Header - Asym.Unit
Biol.Unit 1 (71 KB)
Header - Biol.Unit 1
Biol.Unit 2 (72 KB)
Header - Biol.Unit 2
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