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1Y9M
Asym. Unit
Info
Asym.Unit (105 KB)
Biol.Unit 1 (99 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF EXO-INULINASE FROM ASPERGILLUS AWAMORI IN SPACEGROUP P212121
Authors
:
R. A. P. Nagem, A. L. Rojas, A. M. Golubev, O. S. Korneeva, E. V. Eneyskaya A. A. Kulminskaya, K. N. Neustroev, I. Polikarpov
Date
:
16 Dec 04 (Deposition) - 28 Dec 04 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.89
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Exo-Inulinase, Aspergillus Awamori, Glycoside Hydrolase Family 32, Crystallographic Structure, Native Structure, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. A. P. Nagem, A. L. Rojas, A. M. Golubev, O. S. Korneeva, E. V. Eneyskaya, A. A. Kulminskaya, K. N. Neustroev, I. Polikarpov
Crystal Structure Of Exo-Inulinase From Aspergillus Awamori The Enzyme Fold And Structural Determinants Of Substrate Recognition
J. Mol. Biol. V. 344 471 2004
(for further references see the
PDB file header
)
[
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Hetero Components
(3, 15)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
2a: ALPHA-D-MANNOSE (MANa)
2b: ALPHA-D-MANNOSE (MANb)
2c: ALPHA-D-MANNOSE (MANc)
2d: ALPHA-D-MANNOSE (MANd)
3a: N-ACETYL-D-GLUCOSAMINE (NAGa)
3b: N-ACETYL-D-GLUCOSAMINE (NAGb)
3c: N-ACETYL-D-GLUCOSAMINE (NAGc)
3d: N-ACETYL-D-GLUCOSAMINE (NAGd)
3e: N-ACETYL-D-GLUCOSAMINE (NAGe)
3f: N-ACETYL-D-GLUCOSAMINE (NAGf)
3g: N-ACETYL-D-GLUCOSAMINE (NAGg)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
4
Ligand/Ion
GLYCEROL
2
MAN
4
Ligand/Ion
ALPHA-D-MANNOSE
3
NAG
7
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
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]
Sites
(15, 15)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:59 , GLY A:61 , ASN A:67 , PHE A:93 , GLY A:94 , NAG A:1002 , HOH A:7121 , HOH A:7197 , HOH A:7258 , HOH A:7272 , HOH A:7284 , HOH A:7323 , HOH A:7629
BINDING SITE FOR RESIDUE NAG A 1001
02
AC2
SOFTWARE
GLY A:94 , NAG A:1001 , MAN A:1003 , MAN A:1004 , MAN A:1005 , HOH A:7197 , HOH A:7284 , HOH A:7593
BINDING SITE FOR RESIDUE NAG A 1002
03
AC3
SOFTWARE
NAG A:1002 , MAN A:1004 , MAN A:1006
BINDING SITE FOR RESIDUE MAN A 1003
04
AC4
SOFTWARE
NAG A:1002 , MAN A:1003 , MAN A:1005 , HOH A:7618
BINDING SITE FOR RESIDUE MAN A 1004
05
AC5
SOFTWARE
LYS A:390 , ASP A:524 , ARG A:526 , NAG A:1002 , MAN A:1004 , HOH A:7239 , HOH A:7273 , HOH A:7385 , HOH A:7546 , HOH A:7613
BINDING SITE FOR RESIDUE MAN A 1005
06
AC6
SOFTWARE
MAN A:1003
BINDING SITE FOR RESIDUE MAN A 1006
07
AC7
SOFTWARE
VAL A:110 , ASN A:111 , TRP A:194 , GLN A:199 , NAG A:2002 , HOH A:7623
BINDING SITE FOR RESIDUE NAG A 2001
08
AC8
SOFTWARE
GLN A:199 , NAG A:2001 , HOH A:7623
BINDING SITE FOR RESIDUE NAG A 2002
09
AC9
SOFTWARE
ASN A:430 , THR A:432 , HOH A:7117 , HOH A:7523
BINDING SITE FOR RESIDUE NAG A 3001
10
BC1
SOFTWARE
GLN A:236 , ASN A:300
BINDING SITE FOR RESIDUE NAG A 4001
11
BC2
SOFTWARE
GLN A:145 , ASN A:398 , HOH A:7122 , HOH A:7473
BINDING SITE FOR RESIDUE NAG A 5001
12
BC3
SOFTWARE
ASN A:40 , GLN A:57 , TRP A:65 , ARG A:382 , GOL A:7002 , HOH A:7516 , HOH A:7520 , HOH A:7561
BINDING SITE FOR RESIDUE GOL A 7001
13
BC4
SOFTWARE
ARG A:188 , VAL A:239 , GLU A:241 , ASN A:265 , TRP A:335 , ARG A:382 , GOL A:7001 , HOH A:7227 , HOH A:7369
BINDING SITE FOR RESIDUE GOL A 7002
14
BC5
SOFTWARE
ASP A:440 , PHE A:447 , HIS A:467 , HOH A:7315 , HOH A:7365 , HOH A:7567 , HOH A:7592
BINDING SITE FOR RESIDUE GOL A 7003
15
BC6
SOFTWARE
LYS A:390 , THR A:391
BINDING SITE FOR RESIDUE GOL A 7004
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: GLYCOSYL_HYDROL_F32 (A:31-44)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GLYCOSYL_HYDROL_F32
PS00609
Glycosyl hydrolases family 32 active site.
INUE_ASPAW
31-44
1
A:31-44
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d1y9ma2 (A:20-372)
2a: SCOP_d1y9ma1 (A:373-536)
View:
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Classes
(
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(
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(
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
5-bladed beta-propeller
(42)
Superfamily
:
Arabinanase/levansucrase/invertase
(37)
Family
:
Glycosyl hydrolases family 32 N-terminal domain
(5)
Protein domain
:
Exo-inulinase
(3)
Aspergillus awamori [TaxId: 105351]
(3)
1a
d1y9ma2
A:20-372
Fold
:
Concanavalin A-like lectins/glucanases
(797)
Superfamily
:
Concanavalin A-like lectins/glucanases
(797)
Family
:
Glycosyl hydrolases family 32 C-terminal domain
(4)
Protein domain
:
Exo-inulinase
(3)
Aspergillus awamori [TaxId: 105351]
(3)
2a
d1y9ma1
A:373-536
[
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]
CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1y9mA02 (A:374-536)
View:
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Topologies
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)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Jelly Rolls
(1293)
Homologous Superfamily
:
Exo-inulinase; domain 1
(13)
Aspergillus awamori. Organism_taxid: 105351. Strain: 2250
(3)
1a
1y9mA02
A:374-536
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Atom Selection
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Protein
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Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
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