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1Y9J
Asym. Unit
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Asym.Unit (761 KB)
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Models
(20 )
Title
:
SOLUTION STRUCTURE OF THE RAT SLY1 N-TERMINAL DOMAIN
Authors
:
D. Arac, I. Dulubova, J. Pei, I. Huryeva, N. V. Grishin, J. Rizo
Date
:
15 Dec 04 (Deposition) - 15 Feb 05 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Keywords
:
Membrane Traffic, Sly1, Sm Proteins, Snares, Protein Nmr, Protein Transport
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. Arac, I. Dulubova, J. Pei, I. Huryeva, N. V. Grishin, J. Rizo
Three-Dimensional Structure Of The Rsly1 N-Terminal Domain Reveals A Conformational Change Induced By Binding To Syntaxin 5.
J. Mol. Biol. V. 346 589 2005
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
(0, 0)
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available in "Model" view)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(6, 6)
Info
All Exons
Exon 1.1a (A:8-16)
Exon 1.2b (A:16-39)
Exon 1.3a (A:40-69)
Exon 1.4 (A:69-99)
Exon 1.5 (A:100-140)
Exon 1.6a (A:141-147)
View:
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All Exon Boundaries
1: Boundary -/1.1a
2: Boundary 1.1a/1.2b
3: Boundary 1.2b/1.3a
4: Boundary 1.3a/1.4
5: Boundary 1.4/1.5
6: Boundary 1.5/1.6a
7: Boundary 1.6a/1.7
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENSRNOT00000040548
1a
ENSRNOE00000352445
chr6:
71453366-71453424
59
SCFD1_RAT
1-16
16
1
A:8-16
9
1.2b
ENSRNOT00000040548
2b
ENSRNOE00000046452
chr6:
71459175-71459245
71
SCFD1_RAT
16-39
24
1
A:16-39
24
1.3a
ENSRNOT00000040548
3a
ENSRNOE00000046702
chr6:
71461437-71461525
89
SCFD1_RAT
40-69
30
1
A:40-69
30
1.4
ENSRNOT00000040548
4
ENSRNOE00000046854
chr6:
71464448-71464538
91
SCFD1_RAT
69-99
31
1
A:69-99
31
1.5
ENSRNOT00000040548
5
ENSRNOE00000046995
chr6:
71470250-71470372
123
SCFD1_RAT
100-140
41
1
A:100-140
41
1.6a
ENSRNOT00000040548
6a
ENSRNOE00000279263
chr6:
71471949-71472036
88
SCFD1_RAT
141-170
30
1
A:141-147
7
1.7
ENSRNOT00000040548
7
ENSRNOE00000337937
chr6:
71473688-71473777
90
SCFD1_RAT
170-200
31
0
-
-
1.8
ENSRNOT00000040548
8
ENSRNOE00000296211
chr6:
71476437-71476492
56
SCFD1_RAT
200-218
19
0
-
-
1.9
ENSRNOT00000040548
9
ENSRNOE00000286540
chr6:
71477299-71477384
86
SCFD1_RAT
219-247
29
0
-
-
1.10
ENSRNOT00000040548
10
ENSRNOE00000325877
chr6:
71479749-71479848
100
SCFD1_RAT
247-280
34
0
-
-
1.11
ENSRNOT00000040548
11
ENSRNOE00000292451
chr6:
71490845-71490984
140
SCFD1_RAT
281-327
47
0
-
-
1.12
ENSRNOT00000040548
12
ENSRNOE00000339953
chr6:
71492440-71492530
91
SCFD1_RAT
327-357
31
0
-
-
1.13
ENSRNOT00000040548
13
ENSRNOE00000350073
chr6:
71493181-71493254
74
SCFD1_RAT
358-382
25
0
-
-
1.14
ENSRNOT00000040548
14
ENSRNOE00000310028
chr6:
71493933-71494014
82
SCFD1_RAT
382-409
28
0
-
-
1.16
ENSRNOT00000040548
16
ENSRNOE00000291450
chr6:
71503599-71503695
97
SCFD1_RAT
410-442
33
0
-
-
1.17
ENSRNOT00000040548
17
ENSRNOE00000362289
chr6:
71506204-71506274
71
SCFD1_RAT
442-465
24
0
-
-
1.18
ENSRNOT00000040548
18
ENSRNOE00000286331
chr6:
71509211-71509290
80
SCFD1_RAT
466-492
27
0
-
-
1.19
ENSRNOT00000040548
19
ENSRNOE00000364060
chr6:
71511901-71511963
63
SCFD1_RAT
492-513
22
0
-
-
1.20
ENSRNOT00000040548
20
ENSRNOE00000337267
chr6:
71513801-71513876
76
SCFD1_RAT
513-538
26
0
-
-
1.21
ENSRNOT00000040548
21
ENSRNOE00000282626
chr6:
71519347-71519400
54
SCFD1_RAT
539-556
18
0
-
-
1.22
ENSRNOT00000040548
22
ENSRNOE00000364790
chr6:
71523078-71523130
53
SCFD1_RAT
557-574
18
0
-
-
1.24
ENSRNOT00000040548
24
ENSRNOE00000316936
chr6:
71524919-71524952
34
SCFD1_RAT
574-585
12
0
-
-
1.25
ENSRNOT00000040548
25
ENSRNOE00000312289
chr6:
71525676-71525741
66
SCFD1_RAT
586-607
22
0
-
-
1.26
ENSRNOT00000040548
26
ENSRNOE00000361379
chr6:
71526964-71527032
69
SCFD1_RAT
608-630
23
0
-
-
1.27
ENSRNOT00000040548
27
ENSRNOE00000306993
chr6:
71532156-71532347
192
SCFD1_RAT
631-637
7
0
-
-
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SCOP Domains
(0, 0)
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1y9jA01 (A:8-140)
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Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.2060, no name defined]
(7)
Norway rat (Rattus norvegicus)
(2)
1a
1y9jA01
A:8-140
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Pfam Domains
(1, 1)
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1a: PFAM_Sec1_1y9jA01 (A:38-147)
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Clan
:
no clan defined [family: Sec1]
(5)
Family
:
Sec1
(5)
Rattus norvegicus (Rat)
(2)
1a
Sec1-1y9jA01
A:38-147
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Chain A
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