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1Y8E
Biol. Unit 2
Info
Asym.Unit (97 KB)
Biol.Unit 1 (47 KB)
Biol.Unit 2 (45 KB)
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(1)
Title
:
VCP:SURAMIN COMPLEX
Authors
:
V. K. Ganesh, S. K. Muthuvel, S. A. Smith, G. J. Kotwal, K. H. Murthy
Date
:
12 Dec 04 (Deposition) - 23 Aug 05 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Beta Barrel, Viral Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
V. K. Ganesh, S. K. Muthuvel, S. A. Smith, G. J. Kotwal, K. H. Murthy
Structural Basis For Antagonism By Suramin Of Heparin Binding To Vaccinia Complement Protein.
Biochemistry V. 44 10757 2005
(for further references see the
PDB file header
)
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: 8,8'-[CARBONYLBIS[IMINO-3,1-PHENYL... (SVRa)
1b: 8,8'-[CARBONYLBIS[IMINO-3,1-PHENYL... (SVRb)
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No.
Name
Count
Type
Full Name
1
SVR
1
Ligand/Ion
8,8'-[CARBONYLBIS[IMINO-3,1-PHENYLENECARBONYLIMINO(4-METHYL-3,1-PHENYLENE)CARBONYLIMINO]]BIS-1,3,5-NAPHTHALENETRISULFONIC ACID
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Sites
(1, 1)
Info
All Sites
1: AC2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC2
SOFTWARE
LYS B:214 , TYR B:219 , LYS B:220 , LEU B:221 , SER B:222 , LYS B:241 , VAL B:243 , ARG B:244 , HOH B:535 , HOH B:543 , HOH B:608 , HOH B:648 , HOH B:719
BINDING SITE FOR RESIDUE SVR B 502
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(1, 3)
Info
All PROSITE Patterns/Profiles
1: SUSHI (B:185-244)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SUSHI
PS50923
Sushi/CCP/SCR domain profile.
VCP_VACCW
19-83
84-145
146-203
204-263
3
-
-
B:65-126
-
B:127-184
-
B:185-244
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d1y8ea1 (A:1-64)
1b: SCOP_d1y8ea3 (A:127-184)
1c: SCOP_d1y8ea4 (A:185-244)
1d: SCOP_d1y8eb1 (B:2-64)
1e: SCOP_d1y8eb2 (B:65-126)
1f: SCOP_d1y8eb3 (B:127-184)
1g: SCOP_d1y8eb4 (B:185-244)
1h: SCOP_d1y8ea2 (A:65-126)
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Class
:
Small proteins
(3458)
Fold
:
Complement control module/SCR domain
(70)
Superfamily
:
Complement control module/SCR domain
(70)
Family
:
Complement control module/SCR domain
(67)
Protein domain
:
Complement control protein
(8)
Vaccinia virus [TaxId: 10245]
(8)
1a
d1y8ea1
A:1-64
1b
d1y8ea3
A:127-184
1c
d1y8ea4
A:185-244
1d
d1y8eb1
B:2-64
1e
d1y8eb2
B:65-126
1f
d1y8eb3
B:127-184
1g
d1y8eb4
B:185-244
1h
d1y8ea2
A:65-126
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CATH Domains
(1, 8)
Info
all CATH domains
1a: CATH_1y8eB02 (B:66-126)
1b: CATH_1y8eA02 (A:66-125)
1c: CATH_1y8eB04 (B:185-244)
1d: CATH_1y8eA04 (A:185-234)
1e: CATH_1y8eA03 (A:127-184)
1f: CATH_1y8eB03 (B:127-184)
1g: CATH_1y8eB01 (B:2-65)
1h: CATH_1y8eA01 (A:1-65)
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Class
:
Mainly Beta
(13760)
Architecture
:
Ribbon
(789)
Topology
:
Complement Module; domain 1
(62)
Homologous Superfamily
:
Complement Module, domain 1
(60)
Vaccinia virus. Organism_taxid: 10245. Strain: western reserve.
(1)
1a
1y8eB02
B:66-126
1b
1y8eA02
A:66-125
1c
1y8eB04
B:185-244
1d
1y8eA04
A:185-234
1e
1y8eA03
A:127-184
1f
1y8eB03
B:127-184
1g
1y8eB01
B:2-65
1h
1y8eA01
A:1-65
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Pfam Domains
(1, 8)
Info
all PFAM domains
1a: PFAM_Sushi_1y8eB01 (B:187-242)
1b: PFAM_Sushi_1y8eB02 (B:187-242)
1c: PFAM_Sushi_1y8eB03 (B:187-242)
1d: PFAM_Sushi_1y8eB04 (B:187-242)
1e: PFAM_Sushi_1y8eB05 (B:187-242)
1f: PFAM_Sushi_1y8eB06 (B:187-242)
1g: PFAM_Sushi_1y8eB07 (B:187-242)
1h: PFAM_Sushi_1y8eB08 (B:187-242)
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Clan
:
no clan defined [family: Sushi]
(50)
Family
:
Sushi
(50)
Vaccinia virus (strain Western Reserve) (VACV) (Vaccinia virus (strain WR))
(5)
1a
Sushi-1y8eB01
B:187-242
1b
Sushi-1y8eB02
B:187-242
1c
Sushi-1y8eB03
B:187-242
1d
Sushi-1y8eB04
B:187-242
1e
Sushi-1y8eB05
B:187-242
1f
Sushi-1y8eB06
B:187-242
1g
Sushi-1y8eB07
B:187-242
1h
Sushi-1y8eB08
B:187-242
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Chain B
Asymmetric Unit 1
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Asym.Unit (97 KB)
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