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1Y8E
Asym. Unit
Info
Asym.Unit (97 KB)
Biol.Unit 1 (47 KB)
Biol.Unit 2 (45 KB)
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(1)
Title
:
VCP:SURAMIN COMPLEX
Authors
:
V. K. Ganesh, S. K. Muthuvel, S. A. Smith, G. J. Kotwal, K. H. Murthy
Date
:
12 Dec 04 (Deposition) - 23 Aug 05 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Beta Barrel, Viral Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
V. K. Ganesh, S. K. Muthuvel, S. A. Smith, G. J. Kotwal, K. H. Murthy
Structural Basis For Antagonism By Suramin Of Heparin Binding To Vaccinia Complement Protein.
Biochemistry V. 44 10757 2005
(for further references see the
PDB file header
)
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: 8,8'-[CARBONYLBIS[IMINO-3,1-PHENYL... (SVRa)
1b: 8,8'-[CARBONYLBIS[IMINO-3,1-PHENYL... (SVRb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
SVR
2
Ligand/Ion
8,8'-[CARBONYLBIS[IMINO-3,1-PHENYLENECARBONYLIMINO(4-METHYL-3,1-PHENYLENE)CARBONYLIMINO]]BIS-1,3,5-NAPHTHALENETRISULFONIC ACID
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LYS A:214 , TYR A:217 , LYS A:220 , LEU A:221 , SER A:222 , LYS A:241 , VAL A:243 , ARG A:244 , HOH A:529 , HOH A:548 , HOH A:557 , HOH A:572 , HOH A:604 , HOH A:613 , HOH A:635 , HOH A:639 , HOH A:669 , HOH A:699 , HOH A:726 , HOH A:731
BINDING SITE FOR RESIDUE SVR A 501
2
AC2
SOFTWARE
LYS B:214 , TYR B:219 , LYS B:220 , LEU B:221 , SER B:222 , LYS B:241 , VAL B:243 , ARG B:244 , HOH B:535 , HOH B:543 , HOH B:608 , HOH B:648 , HOH B:719
BINDING SITE FOR RESIDUE SVR B 502
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 6)
Info
All PROSITE Patterns/Profiles
1: SUSHI (-|A:65-126,B:65-126|A:127-184,B:12...)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SUSHI
PS50923
Sushi/CCP/SCR domain profile.
VCP_VACCW
19-83
84-145
146-203
204-263
6
-
A:65-126
B:65-126
A:127-184
B:127-184
A:185-244
B:185-244
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d1y8ea1 (A:1-64)
1b: SCOP_d1y8ea3 (A:127-184)
1c: SCOP_d1y8ea4 (A:185-244)
1d: SCOP_d1y8eb1 (B:2-64)
1e: SCOP_d1y8eb2 (B:65-126)
1f: SCOP_d1y8eb3 (B:127-184)
1g: SCOP_d1y8eb4 (B:185-244)
1h: SCOP_d1y8ea2 (A:65-126)
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Protein Domains
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)
(
)
Organisms
(
)
(
)
Class
:
Small proteins
(3458)
Fold
:
Complement control module/SCR domain
(70)
Superfamily
:
Complement control module/SCR domain
(70)
Family
:
Complement control module/SCR domain
(67)
Protein domain
:
Complement control protein
(8)
Vaccinia virus [TaxId: 10245]
(8)
1a
d1y8ea1
A:1-64
1b
d1y8ea3
A:127-184
1c
d1y8ea4
A:185-244
1d
d1y8eb1
B:2-64
1e
d1y8eb2
B:65-126
1f
d1y8eb3
B:127-184
1g
d1y8eb4
B:185-244
1h
d1y8ea2
A:65-126
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CATH Domains
(1, 8)
Info
all CATH domains
1a: CATH_1y8eB02 (B:66-126)
1b: CATH_1y8eA02 (A:66-125)
1c: CATH_1y8eB04 (B:185-244)
1d: CATH_1y8eA04 (A:185-234)
1e: CATH_1y8eA03 (A:127-184)
1f: CATH_1y8eB03 (B:127-184)
1g: CATH_1y8eB01 (B:2-65)
1h: CATH_1y8eA01 (A:1-65)
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Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Ribbon
(789)
Topology
:
Complement Module; domain 1
(62)
Homologous Superfamily
:
Complement Module, domain 1
(60)
Vaccinia virus. Organism_taxid: 10245. Strain: western reserve.
(1)
1a
1y8eB02
B:66-126
1b
1y8eA02
A:66-125
1c
1y8eB04
B:185-244
1d
1y8eA04
A:185-234
1e
1y8eA03
A:127-184
1f
1y8eB03
B:127-184
1g
1y8eB01
B:2-65
1h
1y8eA01
A:1-65
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Pfam Domains
(1, 8)
Info
all PFAM domains
1a: PFAM_Sushi_1y8eB01 (B:187-242)
1b: PFAM_Sushi_1y8eB02 (B:187-242)
1c: PFAM_Sushi_1y8eB03 (B:187-242)
1d: PFAM_Sushi_1y8eB04 (B:187-242)
1e: PFAM_Sushi_1y8eB05 (B:187-242)
1f: PFAM_Sushi_1y8eB06 (B:187-242)
1g: PFAM_Sushi_1y8eB07 (B:187-242)
1h: PFAM_Sushi_1y8eB08 (B:187-242)
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Clan
:
no clan defined [family: Sushi]
(50)
Family
:
Sushi
(50)
Vaccinia virus (strain Western Reserve) (VACV) (Vaccinia virus (strain WR))
(5)
1a
Sushi-1y8eB01
B:187-242
1b
Sushi-1y8eB02
B:187-242
1c
Sushi-1y8eB03
B:187-242
1d
Sushi-1y8eB04
B:187-242
1e
Sushi-1y8eB05
B:187-242
1f
Sushi-1y8eB06
B:187-242
1g
Sushi-1y8eB07
B:187-242
1h
Sushi-1y8eB08
B:187-242
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Asym.Unit (97 KB)
Header - Asym.Unit
Biol.Unit 1 (47 KB)
Header - Biol.Unit 1
Biol.Unit 2 (45 KB)
Header - Biol.Unit 2
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