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1Y82
Biol. Unit 3
Info
Asym.Unit (102 KB)
Biol.Unit 1 (94 KB)
Biol.Unit 2 (49 KB)
Biol.Unit 3 (50 KB)
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(1)
Title
:
CONSERVED HYPOTHETICAL PROTEIN PFU-367848-001 FROM PYROCOCCUS FURIOSUS
Authors
:
P. Horanyi, W. Tempel, J. Habel, L. Chen, D. Lee, D. Nguyen, S. -H. Chang, Q. Florence, W. Zhou, D. Lin, H. Zhang, J. Praissman, F. E. Jenney Jr. , M. W. W. Adams, Z. -J. Liu, J. P. Rose, B. C. Wang, Southeast Collaborat Structural Genomics (Secsg)
Date
:
10 Dec 04 (Deposition) - 25 Jan 05 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: A,B (1x)
Keywords
:
Structural Genomics, Conserved Hypothetical Protein, Secsg, Psi, Southeast Collaboratory For Structural Genomics, Protein Structure Initiative, Pyrococcus Furiosus, Pfu-367848-001, Hyperthermophile, Unknown Function
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. Horanyi, W. Tempel, J. Habel, L. Chen, D. Lee, D. Nguyen, S. -H. Chang Q. Florence, W. Zhou, D. Lin, H. Zhang, J. Praissman, F. E. Jenney Jr. , M. W. W. Adams, Z. -J. Liu, J. P. Rose, B. C. Wang, Southeast Collaboratory For Structural Genomics (Secsg)
Conserved Hypothetical Protein Pfu-367848-001 From Pyrococcus Furiosus
To Be Published
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Hetero Components
(2, 36)
Info
All Hetero Components
1a: SELENOMETHIONINE (MSEa)
1aa: SELENOMETHIONINE (MSEaa)
1ab: SELENOMETHIONINE (MSEab)
1ac: SELENOMETHIONINE (MSEac)
1ad: SELENOMETHIONINE (MSEad)
1ae: SELENOMETHIONINE (MSEae)
1b: SELENOMETHIONINE (MSEb)
1c: SELENOMETHIONINE (MSEc)
1d: SELENOMETHIONINE (MSEd)
1e: SELENOMETHIONINE (MSEe)
1f: SELENOMETHIONINE (MSEf)
1g: SELENOMETHIONINE (MSEg)
1h: SELENOMETHIONINE (MSEh)
1i: SELENOMETHIONINE (MSEi)
1j: SELENOMETHIONINE (MSEj)
1k: SELENOMETHIONINE (MSEk)
1l: SELENOMETHIONINE (MSEl)
1m: SELENOMETHIONINE (MSEm)
1n: SELENOMETHIONINE (MSEn)
1o: SELENOMETHIONINE (MSEo)
1p: SELENOMETHIONINE (MSEp)
1q: SELENOMETHIONINE (MSEq)
1r: SELENOMETHIONINE (MSEr)
1s: SELENOMETHIONINE (MSEs)
1t: SELENOMETHIONINE (MSEt)
1u: SELENOMETHIONINE (MSEu)
1v: SELENOMETHIONINE (MSEv)
1w: SELENOMETHIONINE (MSEw)
1x: SELENOMETHIONINE (MSEx)
1y: SELENOMETHIONINE (MSEy)
1z: SELENOMETHIONINE (MSEz)
2a: UNKNOWN ATOM OR ION (UNXa)
2aa: UNKNOWN ATOM OR ION (UNXaa)
2ab: UNKNOWN ATOM OR ION (UNXab)
2ac: UNKNOWN ATOM OR ION (UNXac)
2ad: UNKNOWN ATOM OR ION (UNXad)
2ae: UNKNOWN ATOM OR ION (UNXae)
2af: UNKNOWN ATOM OR ION (UNXaf)
2ag: UNKNOWN ATOM OR ION (UNXag)
2ah: UNKNOWN ATOM OR ION (UNXah)
2ai: UNKNOWN ATOM OR ION (UNXai)
2aj: UNKNOWN ATOM OR ION (UNXaj)
2ak: UNKNOWN ATOM OR ION (UNXak)
2al: UNKNOWN ATOM OR ION (UNXal)
2am: UNKNOWN ATOM OR ION (UNXam)
2an: UNKNOWN ATOM OR ION (UNXan)
2ao: UNKNOWN ATOM OR ION (UNXao)
2ap: UNKNOWN ATOM OR ION (UNXap)
2b: UNKNOWN ATOM OR ION (UNXb)
2c: UNKNOWN ATOM OR ION (UNXc)
2d: UNKNOWN ATOM OR ION (UNXd)
2e: UNKNOWN ATOM OR ION (UNXe)
2f: UNKNOWN ATOM OR ION (UNXf)
2g: UNKNOWN ATOM OR ION (UNXg)
2h: UNKNOWN ATOM OR ION (UNXh)
2i: UNKNOWN ATOM OR ION (UNXi)
2j: UNKNOWN ATOM OR ION (UNXj)
2k: UNKNOWN ATOM OR ION (UNXk)
2l: UNKNOWN ATOM OR ION (UNXl)
2m: UNKNOWN ATOM OR ION (UNXm)
2n: UNKNOWN ATOM OR ION (UNXn)
2o: UNKNOWN ATOM OR ION (UNXo)
2p: UNKNOWN ATOM OR ION (UNXp)
2q: UNKNOWN ATOM OR ION (UNXq)
2r: UNKNOWN ATOM OR ION (UNXr)
2s: UNKNOWN ATOM OR ION (UNXs)
2t: UNKNOWN ATOM OR ION (UNXt)
2u: UNKNOWN ATOM OR ION (UNXu)
2v: UNKNOWN ATOM OR ION (UNXv)
2w: UNKNOWN ATOM OR ION (UNXw)
2x: UNKNOWN ATOM OR ION (UNXx)
2y: UNKNOWN ATOM OR ION (UNXy)
2z: UNKNOWN ATOM OR ION (UNXz)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MSE
16
Mod. Amino Acid
SELENOMETHIONINE
2
UNX
20
Ligand/Ion
UNKNOWN ATOM OR ION
[
close Hetero Component info
]
Sites
(20, 20)
Info
All Sites
01: AC3 (SOFTWARE)
02: AC4 (SOFTWARE)
03: AC7 (SOFTWARE)
04: BC1 (SOFTWARE)
05: BC3 (SOFTWARE)
06: BC4 (SOFTWARE)
07: BC6 (SOFTWARE)
08: BC8 (SOFTWARE)
09: BC9 (SOFTWARE)
10: CC2 (SOFTWARE)
11: CC5 (SOFTWARE)
12: DC1 (SOFTWARE)
13: DC2 (SOFTWARE)
14: DC3 (SOFTWARE)
15: DC6 (SOFTWARE)
16: DC7 (SOFTWARE)
17: DC8 (SOFTWARE)
18: DC9 (SOFTWARE)
19: EC2 (SOFTWARE)
20: EC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC3
SOFTWARE
ASP A:10 , SER A:11 , THR A:41 , GLU A:97 , THR A:101
BINDING SITE FOR RESIDUE UNX A 303
02
AC4
SOFTWARE
SER B:38 , VAL B:70 , PRO B:71 , THR B:104
BINDING SITE FOR RESIDUE UNX B 304
03
AC7
SOFTWARE
ASP B:98 , THR B:101 , ARG B:119 , TYR B:120 , UNX B:323 , UNX B:328
BINDING SITE FOR RESIDUE UNX B 307
04
BC1
SOFTWARE
THR A:8 , THR A:101 , THR A:104 , ALA A:105 , UNX A:312 , UNX A:317
BINDING SITE FOR RESIDUE UNX A 310
05
BC3
SOFTWARE
THR A:8 , PHE A:9 , SER A:38 , THR A:41 , UNX A:310
BINDING SITE FOR RESIDUE UNX A 312
06
BC4
SOFTWARE
SER A:38 , VAL A:70 , PRO A:71 , THR A:104
BINDING SITE FOR RESIDUE UNX A 313
07
BC6
SOFTWARE
THR B:8 , THR B:101 , ALA B:105 , UNX B:320 , UNX B:329
BINDING SITE FOR RESIDUE UNX B 315
08
BC8
SOFTWARE
THR A:8 , ASN A:36 , THR A:104 , ALA A:105 , THR A:108 , UNX A:310
BINDING SITE FOR RESIDUE UNX A 317
09
BC9
SOFTWARE
ASP B:10 , LEU B:12 , ALA B:13 , THR B:114 , ASP B:115
BINDING SITE FOR RESIDUE UNX B 318
10
CC2
SOFTWARE
THR B:8 , PHE B:9 , SER B:38 , THR B:41 , UNX B:315
BINDING SITE FOR RESIDUE UNX B 320
11
CC5
SOFTWARE
ASP B:10 , SER B:11 , THR B:41 , GLU B:97 , THR B:101 , UNX B:307 , UNX B:328
BINDING SITE FOR RESIDUE UNX B 323
12
DC1
SOFTWARE
ASP B:10 , SER B:11 , GLU B:97 , ARG B:119 , UNX B:307 , UNX B:323
BINDING SITE FOR RESIDUE UNX B 328
13
DC2
SOFTWARE
THR B:8 , ASN B:36 , THR B:104 , ALA B:105 , THR B:108 , UNX B:315
BINDING SITE FOR RESIDUE UNX B 329
14
DC3
SOFTWARE
GLU A:97 , UNX A:334
BINDING SITE FOR RESIDUE UNX A 330
15
DC6
SOFTWARE
ASP A:10 , SER A:11 , LEU A:12
BINDING SITE FOR RESIDUE UNX A 333
16
DC7
SOFTWARE
ASP A:95 , ILE A:96 , GLU A:97 , UNX A:330 , ILE B:96
BINDING SITE FOR RESIDUE UNX A 334
17
DC8
SOFTWARE
GLU A:97 , ASP A:98 , TYR A:120
BINDING SITE FOR RESIDUE UNX A 335
18
DC9
SOFTWARE
GLU A:84 , PRO A:94 , ASP A:95 , ILE A:96 , TYR B:43
BINDING SITE FOR RESIDUE UNX A 336
19
EC2
SOFTWARE
ASP B:95 , ASP B:98 , ARG B:119
BINDING SITE FOR RESIDUE UNX B 338
20
EC3
SOFTWARE
ASP A:95 , ILE A:96
BINDING SITE FOR RESIDUE UNX A 339
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
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Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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Label:
End label:
Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
View:
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1y82a1 (A:2-148)
1b: SCOP_d1y82b_ (B:)
1c: SCOP_d1y82c_ (C:)
1d: SCOP_d1y82d_ (D:)
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
PIN domain-like
(32)
Superfamily
:
PIN domain-like
(32)
Family
:
PIN domain
(11)
Protein domain
:
Hypothetical protein PF0355
(1)
Pyrococcus furiosus [TaxId: 2261]
(1)
1a
d1y82a1
A:2-148
1b
d1y82b_
B:
1c
d1y82c_
C:
1d
d1y82d_
D:
[
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1y82A00 (A:2-148)
1b: CATH_1y82B00 (B:3-148)
1c: CATH_1y82C00 (C:3-148)
1d: CATH_1y82D00 (D:3-141)
View:
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Classes
(
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(
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Architectures
(
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(
)
Topologies
(
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(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
5'-nuclease
(19)
Pyrococcus furiosus. Organism_taxid: 2261.
(2)
1a
1y82A00
A:2-148
1b
1y82B00
B:3-148
1c
1y82C00
C:3-148
1d
1y82D00
D:3-141
[
close CATH info
]
Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_PIN_1y82D01 (D:7-126)
1b: PFAM_PIN_1y82D02 (D:7-126)
1c: PFAM_PIN_1y82D03 (D:7-126)
1d: PFAM_PIN_1y82D04 (D:7-126)
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Clans
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(
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(
)
Organisms
(
)
(
)
Clan
:
PIN
(27)
Family
:
PIN
(7)
Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
(1)
1a
PIN-1y82D01
D:7-126
1b
PIN-1y82D02
D:7-126
1c
PIN-1y82D03
D:7-126
1d
PIN-1y82D04
D:7-126
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Asymmetric Unit 1
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Asym.Unit (102 KB)
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