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1Y82
Biol. Unit 1
Info
Asym.Unit (102 KB)
Biol.Unit 1 (94 KB)
Biol.Unit 2 (49 KB)
Biol.Unit 3 (50 KB)
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(1)
Title
:
CONSERVED HYPOTHETICAL PROTEIN PFU-367848-001 FROM PYROCOCCUS FURIOSUS
Authors
:
P. Horanyi, W. Tempel, J. Habel, L. Chen, D. Lee, D. Nguyen, S. -H. Chang, Q. Florence, W. Zhou, D. Lin, H. Zhang, J. Praissman, F. E. Jenney Jr. , M. W. W. Adams, Z. -J. Liu, J. P. Rose, B. C. Wang, Southeast Collaborat Structural Genomics (Secsg)
Date
:
10 Dec 04 (Deposition) - 25 Jan 05 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: A,B (1x)
Keywords
:
Structural Genomics, Conserved Hypothetical Protein, Secsg, Psi, Southeast Collaboratory For Structural Genomics, Protein Structure Initiative, Pyrococcus Furiosus, Pfu-367848-001, Hyperthermophile, Unknown Function
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. Horanyi, W. Tempel, J. Habel, L. Chen, D. Lee, D. Nguyen, S. -H. Chang Q. Florence, W. Zhou, D. Lin, H. Zhang, J. Praissman, F. E. Jenney Jr. , M. W. W. Adams, Z. -J. Liu, J. P. Rose, B. C. Wang, Southeast Collaboratory For Structural Genomics (Secsg)
Conserved Hypothetical Protein Pfu-367848-001 From Pyrococcus Furiosus
To Be Published
[
close entry info
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Hetero Components
(2, 73)
Info
All Hetero Components
1a: SELENOMETHIONINE (MSEa)
1aa: SELENOMETHIONINE (MSEaa)
1ab: SELENOMETHIONINE (MSEab)
1ac: SELENOMETHIONINE (MSEac)
1ad: SELENOMETHIONINE (MSEad)
1ae: SELENOMETHIONINE (MSEae)
1b: SELENOMETHIONINE (MSEb)
1c: SELENOMETHIONINE (MSEc)
1d: SELENOMETHIONINE (MSEd)
1e: SELENOMETHIONINE (MSEe)
1f: SELENOMETHIONINE (MSEf)
1g: SELENOMETHIONINE (MSEg)
1h: SELENOMETHIONINE (MSEh)
1i: SELENOMETHIONINE (MSEi)
1j: SELENOMETHIONINE (MSEj)
1k: SELENOMETHIONINE (MSEk)
1l: SELENOMETHIONINE (MSEl)
1m: SELENOMETHIONINE (MSEm)
1n: SELENOMETHIONINE (MSEn)
1o: SELENOMETHIONINE (MSEo)
1p: SELENOMETHIONINE (MSEp)
1q: SELENOMETHIONINE (MSEq)
1r: SELENOMETHIONINE (MSEr)
1s: SELENOMETHIONINE (MSEs)
1t: SELENOMETHIONINE (MSEt)
1u: SELENOMETHIONINE (MSEu)
1v: SELENOMETHIONINE (MSEv)
1w: SELENOMETHIONINE (MSEw)
1x: SELENOMETHIONINE (MSEx)
1y: SELENOMETHIONINE (MSEy)
1z: SELENOMETHIONINE (MSEz)
2a: UNKNOWN ATOM OR ION (UNXa)
2aa: UNKNOWN ATOM OR ION (UNXaa)
2ab: UNKNOWN ATOM OR ION (UNXab)
2ac: UNKNOWN ATOM OR ION (UNXac)
2ad: UNKNOWN ATOM OR ION (UNXad)
2ae: UNKNOWN ATOM OR ION (UNXae)
2af: UNKNOWN ATOM OR ION (UNXaf)
2ag: UNKNOWN ATOM OR ION (UNXag)
2ah: UNKNOWN ATOM OR ION (UNXah)
2ai: UNKNOWN ATOM OR ION (UNXai)
2aj: UNKNOWN ATOM OR ION (UNXaj)
2ak: UNKNOWN ATOM OR ION (UNXak)
2al: UNKNOWN ATOM OR ION (UNXal)
2am: UNKNOWN ATOM OR ION (UNXam)
2an: UNKNOWN ATOM OR ION (UNXan)
2ao: UNKNOWN ATOM OR ION (UNXao)
2ap: UNKNOWN ATOM OR ION (UNXap)
2b: UNKNOWN ATOM OR ION (UNXb)
2c: UNKNOWN ATOM OR ION (UNXc)
2d: UNKNOWN ATOM OR ION (UNXd)
2e: UNKNOWN ATOM OR ION (UNXe)
2f: UNKNOWN ATOM OR ION (UNXf)
2g: UNKNOWN ATOM OR ION (UNXg)
2h: UNKNOWN ATOM OR ION (UNXh)
2i: UNKNOWN ATOM OR ION (UNXi)
2j: UNKNOWN ATOM OR ION (UNXj)
2k: UNKNOWN ATOM OR ION (UNXk)
2l: UNKNOWN ATOM OR ION (UNXl)
2m: UNKNOWN ATOM OR ION (UNXm)
2n: UNKNOWN ATOM OR ION (UNXn)
2o: UNKNOWN ATOM OR ION (UNXo)
2p: UNKNOWN ATOM OR ION (UNXp)
2q: UNKNOWN ATOM OR ION (UNXq)
2r: UNKNOWN ATOM OR ION (UNXr)
2s: UNKNOWN ATOM OR ION (UNXs)
2t: UNKNOWN ATOM OR ION (UNXt)
2u: UNKNOWN ATOM OR ION (UNXu)
2v: UNKNOWN ATOM OR ION (UNXv)
2w: UNKNOWN ATOM OR ION (UNXw)
2x: UNKNOWN ATOM OR ION (UNXx)
2y: UNKNOWN ATOM OR ION (UNXy)
2z: UNKNOWN ATOM OR ION (UNXz)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MSE
31
Mod. Amino Acid
SELENOMETHIONINE
2
UNX
42
Ligand/Ion
UNKNOWN ATOM OR ION
[
close Hetero Component info
]
Sites
(42, 42)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
41: EC5 (SOFTWARE)
42: EC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU D:97 , ASP D:98 , THR D:101 , TYR D:120 , UNX D:325 , UNX D:332
BINDING SITE FOR RESIDUE UNX D 301
02
AC2
SOFTWARE
ASP C:10 , SER C:11 , THR C:41 , GLU C:97 , THR C:101
BINDING SITE FOR RESIDUE UNX C 302
03
AC3
SOFTWARE
ASP A:10 , SER A:11 , THR A:41 , GLU A:97 , THR A:101
BINDING SITE FOR RESIDUE UNX A 303
04
AC4
SOFTWARE
SER B:38 , VAL B:70 , PRO B:71 , THR B:104
BINDING SITE FOR RESIDUE UNX B 304
05
AC5
SOFTWARE
ASP C:10 , ALA C:13 , THR C:114 , ASP C:115
BINDING SITE FOR RESIDUE UNX C 305
06
AC6
SOFTWARE
THR C:8 , ASN C:36 , THR C:104 , ALA C:105 , THR C:108 , UNX C:308
BINDING SITE FOR RESIDUE UNX C 306
07
AC7
SOFTWARE
ASP B:98 , THR B:101 , ARG B:119 , TYR B:120 , UNX B:323 , UNX B:328
BINDING SITE FOR RESIDUE UNX B 307
08
AC8
SOFTWARE
THR C:8 , THR C:101 , THR C:104 , ALA C:105 , UNX C:306 , UNX C:311
BINDING SITE FOR RESIDUE UNX C 308
09
AC9
SOFTWARE
THR D:8 , PHE D:9 , SER D:38 , THR D:41 , UNX D:322
BINDING SITE FOR RESIDUE UNX D 309
10
BC1
SOFTWARE
THR A:8 , THR A:101 , THR A:104 , ALA A:105 , UNX A:312 , UNX A:317
BINDING SITE FOR RESIDUE UNX A 310
11
BC2
SOFTWARE
THR C:8 , PHE C:9 , SER C:38 , THR C:41 , UNX C:308
BINDING SITE FOR RESIDUE UNX C 311
12
BC3
SOFTWARE
THR A:8 , PHE A:9 , SER A:38 , THR A:41 , UNX A:310
BINDING SITE FOR RESIDUE UNX A 312
13
BC4
SOFTWARE
SER A:38 , VAL A:70 , PRO A:71 , THR A:104
BINDING SITE FOR RESIDUE UNX A 313
14
BC5
SOFTWARE
SER C:38 , VAL C:70 , PRO C:71 , THR C:104
BINDING SITE FOR RESIDUE UNX C 314
15
BC6
SOFTWARE
THR B:8 , THR B:101 , ALA B:105 , UNX B:320 , UNX B:329
BINDING SITE FOR RESIDUE UNX B 315
16
BC7
SOFTWARE
ASP C:95 , ILE C:96 , GLU C:97 , UNX C:324
BINDING SITE FOR RESIDUE UNX C 316
17
BC8
SOFTWARE
THR A:8 , ASN A:36 , THR A:104 , ALA A:105 , THR A:108 , UNX A:310
BINDING SITE FOR RESIDUE UNX A 317
18
BC9
SOFTWARE
ASP B:10 , LEU B:12 , ALA B:13 , THR B:114 , ASP B:115
BINDING SITE FOR RESIDUE UNX B 318
19
CC1
SOFTWARE
ASP C:95 , ILE C:96
BINDING SITE FOR RESIDUE UNX C 319
20
CC2
SOFTWARE
THR B:8 , PHE B:9 , SER B:38 , THR B:41 , UNX B:315
BINDING SITE FOR RESIDUE UNX B 320
21
CC3
SOFTWARE
SER D:38 , VAL D:70 , PRO D:71 , LEU D:72 , THR D:104
BINDING SITE FOR RESIDUE UNX D 321
22
CC4
SOFTWARE
THR D:8 , THR D:101 , THR D:104 , ALA D:105 , UNX D:309 , UNX D:327
BINDING SITE FOR RESIDUE UNX D 322
23
CC5
SOFTWARE
ASP B:10 , SER B:11 , THR B:41 , GLU B:97 , THR B:101 , UNX B:307 , UNX B:328
BINDING SITE FOR RESIDUE UNX B 323
24
CC6
SOFTWARE
GLU C:97 , UNX C:316
BINDING SITE FOR RESIDUE UNX C 324
25
CC7
SOFTWARE
ASP D:10 , SER D:11 , THR D:41 , GLU D:97 , THR D:101 , UNX D:301 , UNX D:332
BINDING SITE FOR RESIDUE UNX D 325
26
CC8
SOFTWARE
ASP D:10 , LEU D:12 , ALA D:13 , THR D:114 , ASP D:115 , UNX D:337
BINDING SITE FOR RESIDUE UNX D 326
27
CC9
SOFTWARE
THR D:8 , ASN D:36 , THR D:104 , ALA D:105 , THR D:108 , UNX D:322
BINDING SITE FOR RESIDUE UNX D 327
28
DC1
SOFTWARE
ASP B:10 , SER B:11 , GLU B:97 , ARG B:119 , UNX B:307 , UNX B:323
BINDING SITE FOR RESIDUE UNX B 328
29
DC2
SOFTWARE
THR B:8 , ASN B:36 , THR B:104 , ALA B:105 , THR B:108 , UNX B:315
BINDING SITE FOR RESIDUE UNX B 329
30
DC3
SOFTWARE
GLU A:97 , UNX A:334
BINDING SITE FOR RESIDUE UNX A 330
31
DC4
SOFTWARE
ASP C:10 , SER C:11 , LEU C:12 , UNX C:341 , UNX C:342
BINDING SITE FOR RESIDUE UNX C 331
32
DC5
SOFTWARE
SER D:11 , GLU D:97 , ARG D:119 , UNX D:301 , UNX D:325 , UNX D:340
BINDING SITE FOR RESIDUE UNX D 332
33
DC6
SOFTWARE
ASP A:10 , SER A:11 , LEU A:12
BINDING SITE FOR RESIDUE UNX A 333
34
DC7
SOFTWARE
ASP A:95 , ILE A:96 , GLU A:97 , UNX A:330 , ILE B:96
BINDING SITE FOR RESIDUE UNX A 334
35
DC8
SOFTWARE
GLU A:97 , ASP A:98 , TYR A:120
BINDING SITE FOR RESIDUE UNX A 335
36
DC9
SOFTWARE
GLU A:84 , PRO A:94 , ASP A:95 , ILE A:96 , TYR B:43
BINDING SITE FOR RESIDUE UNX A 336
37
EC1
SOFTWARE
ASP D:10 , ARG D:119 , UNX D:326 , UNX D:340
BINDING SITE FOR RESIDUE UNX D 337
38
EC2
SOFTWARE
ASP B:95 , ASP B:98 , ARG B:119
BINDING SITE FOR RESIDUE UNX B 338
39
EC3
SOFTWARE
ASP A:95 , ILE A:96
BINDING SITE FOR RESIDUE UNX A 339
40
EC4
SOFTWARE
ASP D:10 , SER D:11 , LEU D:12 , ARG D:119 , UNX D:332 , UNX D:337
BINDING SITE FOR RESIDUE UNX D 340
41
EC5
SOFTWARE
ASP C:10 , TYR C:120 , UNX C:331
BINDING SITE FOR RESIDUE UNX C 341
42
EC6
SOFTWARE
SER C:11 , ARG C:44 , GLU C:97 , UNX C:331
BINDING SITE FOR RESIDUE UNX C 342
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
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Exons
(0, 0)
Info
All Exons
View:
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1y82a1 (A:2-148)
1b: SCOP_d1y82b_ (B:)
1c: SCOP_d1y82c_ (C:)
1d: SCOP_d1y82d_ (D:)
View:
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Classes
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(
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(
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)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
PIN domain-like
(32)
Superfamily
:
PIN domain-like
(32)
Family
:
PIN domain
(11)
Protein domain
:
Hypothetical protein PF0355
(1)
Pyrococcus furiosus [TaxId: 2261]
(1)
1a
d1y82a1
A:2-148
1b
d1y82b_
B:
1c
d1y82c_
C:
1d
d1y82d_
D:
[
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1y82A00 (A:2-148)
1b: CATH_1y82B00 (B:3-148)
1c: CATH_1y82C00 (C:3-148)
1d: CATH_1y82D00 (D:3-141)
View:
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Architectures
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Topologies
(
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(
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Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
5'-nuclease
(19)
Pyrococcus furiosus. Organism_taxid: 2261.
(2)
1a
1y82A00
A:2-148
1b
1y82B00
B:3-148
1c
1y82C00
C:3-148
1d
1y82D00
D:3-141
[
close CATH info
]
Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_PIN_1y82D01 (D:7-126)
1b: PFAM_PIN_1y82D02 (D:7-126)
1c: PFAM_PIN_1y82D03 (D:7-126)
1d: PFAM_PIN_1y82D04 (D:7-126)
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Clans
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Organisms
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)
Clan
:
PIN
(27)
Family
:
PIN
(7)
Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
(1)
1a
PIN-1y82D01
D:7-126
1b
PIN-1y82D02
D:7-126
1c
PIN-1y82D03
D:7-126
1d
PIN-1y82D04
D:7-126
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