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1Y82
Asym. Unit
Info
Asym.Unit (102 KB)
Biol.Unit 1 (94 KB)
Biol.Unit 2 (49 KB)
Biol.Unit 3 (50 KB)
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(1)
Title
:
CONSERVED HYPOTHETICAL PROTEIN PFU-367848-001 FROM PYROCOCCUS FURIOSUS
Authors
:
P. Horanyi, W. Tempel, J. Habel, L. Chen, D. Lee, D. Nguyen, S. -H. Chang, Q. Florence, W. Zhou, D. Lin, H. Zhang, J. Praissman, F. E. Jenney Jr. , M. W. W. Adams, Z. -J. Liu, J. P. Rose, B. C. Wang, Southeast Collaborat Structural Genomics (Secsg)
Date
:
10 Dec 04 (Deposition) - 25 Jan 05 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: A,B (1x)
Keywords
:
Structural Genomics, Conserved Hypothetical Protein, Secsg, Psi, Southeast Collaboratory For Structural Genomics, Protein Structure Initiative, Pyrococcus Furiosus, Pfu-367848-001, Hyperthermophile, Unknown Function
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. Horanyi, W. Tempel, J. Habel, L. Chen, D. Lee, D. Nguyen, S. -H. Chang Q. Florence, W. Zhou, D. Lin, H. Zhang, J. Praissman, F. E. Jenney Jr. , M. W. W. Adams, Z. -J. Liu, J. P. Rose, B. C. Wang, Southeast Collaboratory For Structural Genomics (Secsg)
Conserved Hypothetical Protein Pfu-367848-001 From Pyrococcus Furiosus
To Be Published
[
close entry info
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Hetero Components
(2, 73)
Info
All Hetero Components
1a: SELENOMETHIONINE (MSEa)
1aa: SELENOMETHIONINE (MSEaa)
1ab: SELENOMETHIONINE (MSEab)
1ac: SELENOMETHIONINE (MSEac)
1ad: SELENOMETHIONINE (MSEad)
1ae: SELENOMETHIONINE (MSEae)
1b: SELENOMETHIONINE (MSEb)
1c: SELENOMETHIONINE (MSEc)
1d: SELENOMETHIONINE (MSEd)
1e: SELENOMETHIONINE (MSEe)
1f: SELENOMETHIONINE (MSEf)
1g: SELENOMETHIONINE (MSEg)
1h: SELENOMETHIONINE (MSEh)
1i: SELENOMETHIONINE (MSEi)
1j: SELENOMETHIONINE (MSEj)
1k: SELENOMETHIONINE (MSEk)
1l: SELENOMETHIONINE (MSEl)
1m: SELENOMETHIONINE (MSEm)
1n: SELENOMETHIONINE (MSEn)
1o: SELENOMETHIONINE (MSEo)
1p: SELENOMETHIONINE (MSEp)
1q: SELENOMETHIONINE (MSEq)
1r: SELENOMETHIONINE (MSEr)
1s: SELENOMETHIONINE (MSEs)
1t: SELENOMETHIONINE (MSEt)
1u: SELENOMETHIONINE (MSEu)
1v: SELENOMETHIONINE (MSEv)
1w: SELENOMETHIONINE (MSEw)
1x: SELENOMETHIONINE (MSEx)
1y: SELENOMETHIONINE (MSEy)
1z: SELENOMETHIONINE (MSEz)
2a: UNKNOWN ATOM OR ION (UNXa)
2aa: UNKNOWN ATOM OR ION (UNXaa)
2ab: UNKNOWN ATOM OR ION (UNXab)
2ac: UNKNOWN ATOM OR ION (UNXac)
2ad: UNKNOWN ATOM OR ION (UNXad)
2ae: UNKNOWN ATOM OR ION (UNXae)
2af: UNKNOWN ATOM OR ION (UNXaf)
2ag: UNKNOWN ATOM OR ION (UNXag)
2ah: UNKNOWN ATOM OR ION (UNXah)
2ai: UNKNOWN ATOM OR ION (UNXai)
2aj: UNKNOWN ATOM OR ION (UNXaj)
2ak: UNKNOWN ATOM OR ION (UNXak)
2al: UNKNOWN ATOM OR ION (UNXal)
2am: UNKNOWN ATOM OR ION (UNXam)
2an: UNKNOWN ATOM OR ION (UNXan)
2ao: UNKNOWN ATOM OR ION (UNXao)
2ap: UNKNOWN ATOM OR ION (UNXap)
2b: UNKNOWN ATOM OR ION (UNXb)
2c: UNKNOWN ATOM OR ION (UNXc)
2d: UNKNOWN ATOM OR ION (UNXd)
2e: UNKNOWN ATOM OR ION (UNXe)
2f: UNKNOWN ATOM OR ION (UNXf)
2g: UNKNOWN ATOM OR ION (UNXg)
2h: UNKNOWN ATOM OR ION (UNXh)
2i: UNKNOWN ATOM OR ION (UNXi)
2j: UNKNOWN ATOM OR ION (UNXj)
2k: UNKNOWN ATOM OR ION (UNXk)
2l: UNKNOWN ATOM OR ION (UNXl)
2m: UNKNOWN ATOM OR ION (UNXm)
2n: UNKNOWN ATOM OR ION (UNXn)
2o: UNKNOWN ATOM OR ION (UNXo)
2p: UNKNOWN ATOM OR ION (UNXp)
2q: UNKNOWN ATOM OR ION (UNXq)
2r: UNKNOWN ATOM OR ION (UNXr)
2s: UNKNOWN ATOM OR ION (UNXs)
2t: UNKNOWN ATOM OR ION (UNXt)
2u: UNKNOWN ATOM OR ION (UNXu)
2v: UNKNOWN ATOM OR ION (UNXv)
2w: UNKNOWN ATOM OR ION (UNXw)
2x: UNKNOWN ATOM OR ION (UNXx)
2y: UNKNOWN ATOM OR ION (UNXy)
2z: UNKNOWN ATOM OR ION (UNXz)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MSE
31
Mod. Amino Acid
SELENOMETHIONINE
2
UNX
42
Ligand/Ion
UNKNOWN ATOM OR ION
[
close Hetero Component info
]
Sites
(42, 42)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
41: EC5 (SOFTWARE)
42: EC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU D:97 , ASP D:98 , THR D:101 , TYR D:120 , UNX D:325 , UNX D:332
BINDING SITE FOR RESIDUE UNX D 301
02
AC2
SOFTWARE
ASP C:10 , SER C:11 , THR C:41 , GLU C:97 , THR C:101
BINDING SITE FOR RESIDUE UNX C 302
03
AC3
SOFTWARE
ASP A:10 , SER A:11 , THR A:41 , GLU A:97 , THR A:101
BINDING SITE FOR RESIDUE UNX A 303
04
AC4
SOFTWARE
SER B:38 , VAL B:70 , PRO B:71 , THR B:104
BINDING SITE FOR RESIDUE UNX B 304
05
AC5
SOFTWARE
ASP C:10 , ALA C:13 , THR C:114 , ASP C:115
BINDING SITE FOR RESIDUE UNX C 305
06
AC6
SOFTWARE
THR C:8 , ASN C:36 , THR C:104 , ALA C:105 , THR C:108 , UNX C:308
BINDING SITE FOR RESIDUE UNX C 306
07
AC7
SOFTWARE
ASP B:98 , THR B:101 , ARG B:119 , TYR B:120 , UNX B:323 , UNX B:328
BINDING SITE FOR RESIDUE UNX B 307
08
AC8
SOFTWARE
THR C:8 , THR C:101 , THR C:104 , ALA C:105 , UNX C:306 , UNX C:311
BINDING SITE FOR RESIDUE UNX C 308
09
AC9
SOFTWARE
THR D:8 , PHE D:9 , SER D:38 , THR D:41 , UNX D:322
BINDING SITE FOR RESIDUE UNX D 309
10
BC1
SOFTWARE
THR A:8 , THR A:101 , THR A:104 , ALA A:105 , UNX A:312 , UNX A:317
BINDING SITE FOR RESIDUE UNX A 310
11
BC2
SOFTWARE
THR C:8 , PHE C:9 , SER C:38 , THR C:41 , UNX C:308
BINDING SITE FOR RESIDUE UNX C 311
12
BC3
SOFTWARE
THR A:8 , PHE A:9 , SER A:38 , THR A:41 , UNX A:310
BINDING SITE FOR RESIDUE UNX A 312
13
BC4
SOFTWARE
SER A:38 , VAL A:70 , PRO A:71 , THR A:104
BINDING SITE FOR RESIDUE UNX A 313
14
BC5
SOFTWARE
SER C:38 , VAL C:70 , PRO C:71 , THR C:104
BINDING SITE FOR RESIDUE UNX C 314
15
BC6
SOFTWARE
THR B:8 , THR B:101 , ALA B:105 , UNX B:320 , UNX B:329
BINDING SITE FOR RESIDUE UNX B 315
16
BC7
SOFTWARE
ASP C:95 , ILE C:96 , GLU C:97 , UNX C:324
BINDING SITE FOR RESIDUE UNX C 316
17
BC8
SOFTWARE
THR A:8 , ASN A:36 , THR A:104 , ALA A:105 , THR A:108 , UNX A:310
BINDING SITE FOR RESIDUE UNX A 317
18
BC9
SOFTWARE
ASP B:10 , LEU B:12 , ALA B:13 , THR B:114 , ASP B:115
BINDING SITE FOR RESIDUE UNX B 318
19
CC1
SOFTWARE
ASP C:95 , ILE C:96
BINDING SITE FOR RESIDUE UNX C 319
20
CC2
SOFTWARE
THR B:8 , PHE B:9 , SER B:38 , THR B:41 , UNX B:315
BINDING SITE FOR RESIDUE UNX B 320
21
CC3
SOFTWARE
SER D:38 , VAL D:70 , PRO D:71 , LEU D:72 , THR D:104
BINDING SITE FOR RESIDUE UNX D 321
22
CC4
SOFTWARE
THR D:8 , THR D:101 , THR D:104 , ALA D:105 , UNX D:309 , UNX D:327
BINDING SITE FOR RESIDUE UNX D 322
23
CC5
SOFTWARE
ASP B:10 , SER B:11 , THR B:41 , GLU B:97 , THR B:101 , UNX B:307 , UNX B:328
BINDING SITE FOR RESIDUE UNX B 323
24
CC6
SOFTWARE
GLU C:97 , UNX C:316
BINDING SITE FOR RESIDUE UNX C 324
25
CC7
SOFTWARE
ASP D:10 , SER D:11 , THR D:41 , GLU D:97 , THR D:101 , UNX D:301 , UNX D:332
BINDING SITE FOR RESIDUE UNX D 325
26
CC8
SOFTWARE
ASP D:10 , LEU D:12 , ALA D:13 , THR D:114 , ASP D:115 , UNX D:337
BINDING SITE FOR RESIDUE UNX D 326
27
CC9
SOFTWARE
THR D:8 , ASN D:36 , THR D:104 , ALA D:105 , THR D:108 , UNX D:322
BINDING SITE FOR RESIDUE UNX D 327
28
DC1
SOFTWARE
ASP B:10 , SER B:11 , GLU B:97 , ARG B:119 , UNX B:307 , UNX B:323
BINDING SITE FOR RESIDUE UNX B 328
29
DC2
SOFTWARE
THR B:8 , ASN B:36 , THR B:104 , ALA B:105 , THR B:108 , UNX B:315
BINDING SITE FOR RESIDUE UNX B 329
30
DC3
SOFTWARE
GLU A:97 , UNX A:334
BINDING SITE FOR RESIDUE UNX A 330
31
DC4
SOFTWARE
ASP C:10 , SER C:11 , LEU C:12 , UNX C:341 , UNX C:342
BINDING SITE FOR RESIDUE UNX C 331
32
DC5
SOFTWARE
SER D:11 , GLU D:97 , ARG D:119 , UNX D:301 , UNX D:325 , UNX D:340
BINDING SITE FOR RESIDUE UNX D 332
33
DC6
SOFTWARE
ASP A:10 , SER A:11 , LEU A:12
BINDING SITE FOR RESIDUE UNX A 333
34
DC7
SOFTWARE
ASP A:95 , ILE A:96 , GLU A:97 , UNX A:330 , ILE B:96
BINDING SITE FOR RESIDUE UNX A 334
35
DC8
SOFTWARE
GLU A:97 , ASP A:98 , TYR A:120
BINDING SITE FOR RESIDUE UNX A 335
36
DC9
SOFTWARE
GLU A:84 , PRO A:94 , ASP A:95 , ILE A:96 , TYR B:43
BINDING SITE FOR RESIDUE UNX A 336
37
EC1
SOFTWARE
ASP D:10 , ARG D:119 , UNX D:326 , UNX D:340
BINDING SITE FOR RESIDUE UNX D 337
38
EC2
SOFTWARE
ASP B:95 , ASP B:98 , ARG B:119
BINDING SITE FOR RESIDUE UNX B 338
39
EC3
SOFTWARE
ASP A:95 , ILE A:96
BINDING SITE FOR RESIDUE UNX A 339
40
EC4
SOFTWARE
ASP D:10 , SER D:11 , LEU D:12 , ARG D:119 , UNX D:332 , UNX D:337
BINDING SITE FOR RESIDUE UNX D 340
41
EC5
SOFTWARE
ASP C:10 , TYR C:120 , UNX C:331
BINDING SITE FOR RESIDUE UNX C 341
42
EC6
SOFTWARE
SER C:11 , ARG C:44 , GLU C:97 , UNX C:331
BINDING SITE FOR RESIDUE UNX C 342
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
[
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
All Exons
View:
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Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1y82a1 (A:2-148)
1b: SCOP_d1y82b_ (B:)
1c: SCOP_d1y82c_ (C:)
1d: SCOP_d1y82d_ (D:)
View:
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Families
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
PIN domain-like
(32)
Superfamily
:
PIN domain-like
(32)
Family
:
PIN domain
(11)
Protein domain
:
Hypothetical protein PF0355
(1)
Pyrococcus furiosus [TaxId: 2261]
(1)
1a
d1y82a1
A:2-148
1b
d1y82b_
B:
1c
d1y82c_
C:
1d
d1y82d_
D:
[
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1y82A00 (A:2-148)
1b: CATH_1y82B00 (B:3-148)
1c: CATH_1y82C00 (C:3-148)
1d: CATH_1y82D00 (D:3-141)
View:
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Architectures
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Topologies
(
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(
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Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
5'-nuclease
(19)
Pyrococcus furiosus. Organism_taxid: 2261.
(2)
1a
1y82A00
A:2-148
1b
1y82B00
B:3-148
1c
1y82C00
C:3-148
1d
1y82D00
D:3-141
[
close CATH info
]
Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_PIN_1y82D01 (D:7-126)
1b: PFAM_PIN_1y82D02 (D:7-126)
1c: PFAM_PIN_1y82D03 (D:7-126)
1d: PFAM_PIN_1y82D04 (D:7-126)
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Clans
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Organisms
(
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)
Clan
:
PIN
(27)
Family
:
PIN
(7)
Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
(1)
1a
PIN-1y82D01
D:7-126
1b
PIN-1y82D02
D:7-126
1c
PIN-1y82D03
D:7-126
1d
PIN-1y82D04
D:7-126
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