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1Y7V
Asym. Unit
Info
Asym.Unit (175 KB)
Biol.Unit 1 (86 KB)
Biol.Unit 2 (87 KB)
Biol.Unit 3 (331 KB)
Biol.Unit 4 (332 KB)
Biol.Unit 5 (168 KB)
Biol.Unit 6 (168 KB)
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(1)
Title
:
X-RAY STRUCTURE OF HUMAN ACID-BETA-GLUCOSIDASE COVALENTLY BOUND TO CONDURITOL B EPOXIDE
Authors
:
L. Premkumar, A. R. Sawkar, S. Boldin-Adamsky, L. Toker, I. Silman, J. W A. H. Futerman, J. L. Sussman, Israel Structural Proteomics Cente
Date
:
10 Dec 04 (Deposition) - 12 Apr 05 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: A,B (2x)
Biol. Unit 4: A,B (2x)
Biol. Unit 5: A,B (1x)
Biol. Unit 6: A (2x)
Keywords
:
Gaucher Disease, Glucosidase, Glucocerebrosidase, Cerezyme, Hydrolase, Glycosidase, Sphingolipid Metabolism, Glycoprotein, Lysosome, Membrane, Disease Mutation, Alternative Initiation, Israel Structural Proteomics Center, Ispc, Structural Genomics
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. Premkumar, A. R. Sawkar, S. Boldin-Adamsky, L. Toker, I. Silman, J. W. Kelly, A. H. Futerman, J. L. Sussman
X-Ray Structure Of Human Acid-Beta-Glucosidase Covalently Bound To Conduritol-B-Epoxide. Implications For Gaucher Disease.
J. Biol. Chem. V. 280 23815 2005
[
close entry info
]
Hetero Components
(3, 19)
Info
All Hetero Components
1a: 1,2,3,4,5,6-HEXAHYDROXY-CYCLOHEXAN... (INSa)
1b: 1,2,3,4,5,6-HEXAHYDROXY-CYCLOHEXAN... (INSb)
2a: N-ACETYL-D-GLUCOSAMINE (NAGa)
2b: N-ACETYL-D-GLUCOSAMINE (NAGb)
2c: N-ACETYL-D-GLUCOSAMINE (NAGc)
2d: N-ACETYL-D-GLUCOSAMINE (NAGd)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
3f: SULFATE ION (SO4f)
3g: SULFATE ION (SO4g)
3h: SULFATE ION (SO4h)
3i: SULFATE ION (SO4i)
3j: SULFATE ION (SO4j)
3k: SULFATE ION (SO4k)
3l: SULFATE ION (SO4l)
3m: SULFATE ION (SO4m)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
INS
2
Ligand/Ion
1,2,3,4,5,6-HEXAHYDROXY-CYCLOHEXANE
2
NAG
4
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
3
SO4
13
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(19, 19)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:19 , THR A:21 , GLN A:497 , NAG A:499 , HOH A:599
BINDING SITE FOR RESIDUE NAG A 498
02
AC2
SOFTWARE
NAG A:498 , HOH A:601
BINDING SITE FOR RESIDUE NAG A 499
03
AC3
SOFTWARE
ASN B:19 , THR B:21 , NAG B:499
BINDING SITE FOR RESIDUE NAG B 498
04
AC4
SOFTWARE
NAG B:498
BINDING SITE FOR RESIDUE NAG B 499
05
AC5
SOFTWARE
GLU A:254 , ARG A:257 , HOH A:598
BINDING SITE FOR RESIDUE SO4 A 500
06
AC6
SOFTWARE
ARG A:44 , SER A:45
BINDING SITE FOR RESIDUE SO4 A 501
07
AC7
SOFTWARE
TYR A:11 , SER A:12 , ARG A:353 , SER A:356 , TRP A:357 , ASP A:358
BINDING SITE FOR RESIDUE SO4 A 502
08
AC8
SOFTWARE
THR A:63 , GLY A:64 , GLN A:440 , LYS A:473 , HOH A:633
BINDING SITE FOR RESIDUE SO4 A 503
09
AC9
SOFTWARE
LYS A:79 , TRP A:228 , ARG A:277 , HIS A:306 , HOH A:625
BINDING SITE FOR RESIDUE SO4 A 504
10
BC1
SOFTWARE
ARG B:285 , TRP B:312 , LEU B:314 , HIS B:365 , SER B:366 , THR B:369
BINDING SITE FOR RESIDUE SO4 B 500
11
BC2
SOFTWARE
HIS A:290 , LYS A:293
BINDING SITE FOR RESIDUE SO4 A 505
12
BC3
SOFTWARE
LYS B:79 , TRP B:228 , ARG B:277 , HIS B:306 , HOH B:591 , HOH B:592
BINDING SITE FOR RESIDUE SO4 B 501
13
BC4
SOFTWARE
CYS B:4 , GLY B:46 , ARG B:47 , ARG B:48 , GLU B:50 , GLN B:57
BINDING SITE FOR RESIDUE SO4 B 502
14
BC5
SOFTWARE
ARG B:44 , SER B:45 , HOH B:599
BINDING SITE FOR RESIDUE SO4 B 503
15
BC6
SOFTWARE
ARG A:329 , LYS B:321 , ARG B:329
BINDING SITE FOR RESIDUE SO4 A 506
16
BC7
SOFTWARE
GLY B:193 , LYS B:194 , SER B:242 , GLY B:243
BINDING SITE FOR RESIDUE SO4 B 504
17
BC8
SOFTWARE
TYR B:11 , SER B:12 , ARG B:353 , SER B:356 , TRP B:357 , ASP B:358
BINDING SITE FOR RESIDUE SO4 B 505
18
BC9
SOFTWARE
ASP A:127 , PHE A:128 , TRP A:179 , ASN A:234 , TYR A:313 , GLU A:340 , CYS A:342 , TRP A:381 , ASN A:396
BINDING SITE FOR RESIDUE INS A 507
19
CC1
SOFTWARE
ASP B:127 , PHE B:128 , TRP B:179 , ASN B:234 , TYR B:313 , GLU B:340 , CYS B:342 , TRP B:381 , ASN B:396
BINDING SITE FOR RESIDUE INS B 506
[
close Site info
]
SAPs(SNPs)/Variants
(156, 312)
Info
(mutated residues are not available)
All SNPs/Variants
001: VAR_063066 (K7E, chain A/B, )
002: VAR_003255 (V15L, chain A/B, )
003: VAR_032394 (C16S, chain A/B, )
004: VAR_032395 (D24N, chain A/B, )
005: VAR_003256 (F37V, chain A/B, )
006: VAR_009033 (E41K, chain A/B, )
007: VAR_003257 (T43I, chain A/B, )
008: VAR_003258 (G46E, chain A/B, )
009: VAR_032197 (R48Q, chain A/B, )
010: VAR_003259 (R48W, chain A/B, )
011: VAR_032396 (M53T, chain A/B, )
012: VAR_003260 (K79N, chain A/B, )
013: VAR_032397 (A90T, chain A/B, )
014: VAR_009034 (S107L, chain A/B, )
015: VAR_003261 (G113E, chain A/B, )
016: VAR_032398 (N117D, chain A/B, )
017: VAR_032399 (I119S, chain A/B, )
018: VAR_003262 (I119T, chain A/B, )
019: VAR_003263 (R120Q, chain A/B, )
020: VAR_003264 (R120W, chain A/B, )
021: VAR_032198 (P122L, chain A/B, )
022: VAR_003265 (P122S, chain A/B, )
023: VAR_032199 (M123V, chain A/B, )
024: VAR_032200 (D127V, chain A/B, )
025: VAR_009035 (R131C, chain A/B, )
026: VAR_009036 (R131L, chain A/B, )
027: VAR_032400 (T134I, chain A/B, )
028: VAR_003266 (T134P, chain A/B, )
029: VAR_032401 (A136E, chain A/B, )
030: VAR_003267 (D140H, chain A/B, )
031: VAR_003268 (K157Q, chain A/B, )
032: VAR_009037 (P159L, chain A/B, )
033: VAR_032402 (P159T, chain A/B, )
034: VAR_032201 (I161N, chain A/B, )
035: VAR_010059 (I161S, chain A/B, )
036: VAR_032403 (H162P, chain A/B, )
037: VAR_032404 (R170C, chain A/B, )
038: VAR_003269 (R170P, chain A/B, )
039: VAR_032202 (L174F, chain A/B, )
040: VAR_003270 (A176D, chain A/B, )
041: VAR_003271 (P178S, chain A/B, )
042: VAR_032405 (P182L, chain A/B, )
043: VAR_003272 (P182T, chain A/B, )
044: VAR_003273 (W184R, chain A/B, )
045: VAR_032203 (L185F, chain A/B, )
046: VAR_003275 (N188K, chain A/B, )
047: VAR_003274 (N188S, chain A/B, )
048: VAR_010060 (G189V, chain A/B, )
049: VAR_009038 (A190E, chain A/B, )
050: VAR_032406 (A190T, chain A/B, )
051: VAR_032407 (V191E, chain A/B, )
052: VAR_003276 (V191G, chain A/B, )
053: VAR_032204 (G193E, chain A/B, )
054: VAR_003277 (G195E, chain A/B, )
055: VAR_009039 (G195W, chain A/B, )
056: VAR_003278 (S196P, chain A/B, )
057: VAR_032205 (K198E, chain A/B, )
058: VAR_010061 (G202E, chain A/B, )
059: VAR_003279 (G202R, chain A/B, )
060: VAR_010062 (Y205C, chain A/B, )
061: VAR_003280 (Y212H, chain A/B, )
062: VAR_003281 (F213I, chain A/B, )
063: VAR_003282 (F216Y, chain A/B, )
064: VAR_032408 (T231R, chain A/B, )
065: VAR_003283 (S237P, chain A/B, )
066: VAR_032409 (F251L, chain A/B, )
067: VAR_009040 (H255Q, chain A/B, )
068: VAR_003284 (R257Q, chain A/B, )
069: VAR_009041 (F259L, chain A/B, )
070: VAR_032206 (L264I, chain A/B, )
071: VAR_010063 (G265D, chain A/B, )
072: VAR_003285 (P266R, chain A/B, )
073: VAR_032410 (S271G, chain A/B, )
074: VAR_010064 (S271N, chain A/B, )
075: VAR_003286 (R285C, chain A/B, )
076: VAR_009042 (R285H, chain A/B, )
077: VAR_003287 (P289L, chain A/B, )
078: VAR_003288 (K303I, chain A/B, )
079: VAR_009043 (Y304C, chain A/B, )
080: VAR_003289 (A309V, chain A/B, )
081: VAR_009044 (H311R, chain A/B, )
082: VAR_003290 (W312C, chain A/B, )
083: VAR_003291 (Y313H, chain A/B, )
084: VAR_003292 (D315H, chain A/B, )
085: VAR_003293 (A318D, chain A/B, )
086: VAR_003294 (T323I, chain A/B, )
087: VAR_003295 (L324P, chain A/B, )
088: VAR_003296 (G325R, chain A/B, )
089: VAR_003297 (E326K, chain A/B, )
090: VAR_032411 (R329H, chain A/B, )
091: VAR_009045 (A341T, chain A/B, )
092: VAR_003298 (C342G, chain A/B, )
093: VAR_032207 (E349K, chain A/B, )
094: VAR_010065 (V352L, chain A/B, )
095: VAR_010066 (R353G, chain A/B, )
096: VAR_032208 (R353W, chain A/B, )
097: VAR_003299 (R359Q, chain A/B, )
098: VAR_032412 (M361I, chain A/B, )
099: VAR_032209 (Y363C, chain A/B, )
100: VAR_003300 (S364T, chain A/B, )
101: VAR_010067 (S366G, chain A/B, )
102: VAR_009046 (S366N, chain A/B, )
103: VAR_003301 (T369M, chain A/B, )
104: VAR_003302 (N370S, chain A/B, )
105: VAR_032210 (L371V, chain A/B, )
106: VAR_010068 (V375L, chain A/B, )
107: VAR_003303 (G377S, chain A/B, )
108: VAR_003304 (W378G, chain A/B, )
109: VAR_003305 (D380A, chain A/B, )
110: VAR_032211 (D380H, chain A/B, )
111: VAR_003306 (D380N, chain A/B, )
112: VAR_032212 (N382K, chain A/B, )
113: VAR_010069 (P387L, chain A/B, )
114: VAR_003307 (G389E, chain A/B, )
115: VAR_032213 (G390R, chain A/B, )
116: VAR_003308 (P391L, chain A/B, )
117: VAR_003309 (N392I, chain A/B, )
118: VAR_009047 (W393R, chain A/B, )
119: VAR_003310 (V394L, chain A/B, )
120: VAR_003311 (N396T, chain A/B, )
121: VAR_032214 (F397S, chain A/B, )
122: VAR_009048 (V398F, chain A/B, )
123: VAR_010070 (V398L, chain A/B, )
124: VAR_003312 (D399N, chain A/B, )
125: VAR_032413 (D399Y, chain A/B, )
126: VAR_010071 (P401L, chain A/B, )
127: VAR_032414 (I402F, chain A/B, )
128: VAR_010072 (I402T, chain A/B, )
129: VAR_003313 (D409H, chain A/B, )
130: VAR_003314 (D409V, chain A/B, )
131: VAR_010073 (F411I, chain A/B, )
132: VAR_003315 (Y412H, chain A/B, )
133: VAR_010074 (K413Q, chain A/B, )
134: VAR_003316 (P415R, chain A/B, )
135: VAR_032215 (M416V, chain A/B, )
136: VAR_003317 (F417V, chain A/B, )
137: VAR_003318 (Y418C, chain A/B, )
138: VAR_032415 (G421D, chain A/B, )
139: VAR_003319 (K425E, chain A/B, )
140: VAR_063067 (D443N, chain A/B, )
141: VAR_003321 (L444P, chain A/B, )
142: VAR_003320 (L444R, chain A/B, )
143: VAR_003322 (A446P, chain A/B, )
144: VAR_032416 (H451R, chain A/B, )
145: VAR_003323 (A456P, chain A/B, )
146: VAR_063068 (V458L, chain A/B, )
147: VAR_032216 (L461P, chain A/B, )
148: VAR_009049 (N462K, chain A/B, )
149: VAR_003324 (R463C, chain A/B, )
150: VAR_032217 (R463P, chain A/B, )
151: VAR_003325 (L470P, chain A/B, )
152: VAR_009050 (D474Y, chain A/B, )
153: VAR_003326 (G478S, chain A/B, )
154: VAR_010075 (T491I, chain A/B, )
155: VAR_003327 (R496C, chain A/B, )
156: VAR_003328 (R496H, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
001
UniProt
VAR_063066
K
46
E
GLCM_HUMAN
Unclassified
---
A/B
K
7
E
002
UniProt
VAR_003255
V
54
L
GLCM_HUMAN
Disease (GD)
---
A/B
V
15
L
003
UniProt
VAR_032394
C
55
S
GLCM_HUMAN
Disease (GD)
---
A/B
C
16
S
004
UniProt
VAR_032395
D
63
N
GLCM_HUMAN
Disease (GD1)
---
A/B
D
24
N
005
UniProt
VAR_003256
F
76
V
GLCM_HUMAN
Disease (GD)
---
A/B
F
37
V
006
UniProt
VAR_009033
E
80
K
GLCM_HUMAN
Disease (GD2)
1141808
A/B
E
41
K
007
UniProt
VAR_003257
T
82
I
GLCM_HUMAN
Disease (GD)
---
A/B
T
43
I
008
UniProt
VAR_003258
G
85
E
GLCM_HUMAN
Disease (GD)
---
A/B
G
46
E
009
UniProt
VAR_032197
R
87
Q
GLCM_HUMAN
Disease (GD)
---
A/B
R
48
Q
010
UniProt
VAR_003259
R
87
W
GLCM_HUMAN
Disease (GD)
1141814
A/B
R
48
W
011
UniProt
VAR_032396
M
92
T
GLCM_HUMAN
Polymorphism
3205619
A/B
M
53
T
012
UniProt
VAR_003260
K
118
N
GLCM_HUMAN
Disease (GD)
---
A/B
K
79
N
013
UniProt
VAR_032397
A
129
T
GLCM_HUMAN
Disease (GD)
---
A/B
A
90
T
014
UniProt
VAR_009034
S
146
L
GLCM_HUMAN
Disease (GD)
---
A/B
S
107
L
015
UniProt
VAR_003261
G
152
E
GLCM_HUMAN
Disease (GD)
---
A/B
G
113
E
016
UniProt
VAR_032398
N
156
D
GLCM_HUMAN
Disease (GD)
---
A/B
N
117
D
017
UniProt
VAR_032399
I
158
S
GLCM_HUMAN
Disease (GD1)
---
A/B
I
119
S
018
UniProt
VAR_003262
I
158
T
GLCM_HUMAN
Disease (GD)
---
A/B
I
119
T
019
UniProt
VAR_003263
R
159
Q
GLCM_HUMAN
Disease (GD)
---
A/B
R
120
Q
020
UniProt
VAR_003264
R
159
W
GLCM_HUMAN
Disease (GD)
---
A/B
R
120
W
021
UniProt
VAR_032198
P
161
L
GLCM_HUMAN
Disease (GD)
---
A/B
P
122
L
022
UniProt
VAR_003265
P
161
S
GLCM_HUMAN
Disease (GD)
---
A/B
P
122
S
023
UniProt
VAR_032199
M
162
V
GLCM_HUMAN
Disease (GD)
---
A/B
M
123
V
024
UniProt
VAR_032200
D
166
V
GLCM_HUMAN
Disease (GD)
---
A/B
D
127
V
025
UniProt
VAR_009035
R
170
C
GLCM_HUMAN
Disease (GD2)
---
A/B
R
131
C
026
UniProt
VAR_009036
R
170
L
GLCM_HUMAN
Disease (GD)
---
A/B
R
131
L
027
UniProt
VAR_032400
T
173
I
GLCM_HUMAN
Disease (GD)
---
A/B
T
134
I
028
UniProt
VAR_003266
T
173
P
GLCM_HUMAN
Disease (GD)
---
A/B
T
134
P
029
UniProt
VAR_032401
A
175
E
GLCM_HUMAN
Disease (GD)
---
A/B
A
136
E
030
UniProt
VAR_003267
D
179
H
GLCM_HUMAN
Disease (GD)
---
A/B
D
140
H
031
UniProt
VAR_003268
K
196
Q
GLCM_HUMAN
Disease (GD)
---
A/B
K
157
Q
032
UniProt
VAR_009037
P
198
L
GLCM_HUMAN
Disease (GD)
---
A/B
P
159
L
033
UniProt
VAR_032402
P
198
T
GLCM_HUMAN
Disease (GD)
---
A/B
P
159
T
034
UniProt
VAR_032201
I
200
N
GLCM_HUMAN
Disease (GD)
---
A/B
I
161
N
035
UniProt
VAR_010059
I
200
S
GLCM_HUMAN
Disease (GD)
---
A/B
I
161
S
036
UniProt
VAR_032403
H
201
P
GLCM_HUMAN
Disease (GD)
---
A/B
H
162
P
037
UniProt
VAR_032404
R
209
C
GLCM_HUMAN
Disease (GD)
---
A/B
R
170
C
038
UniProt
VAR_003269
R
209
P
GLCM_HUMAN
Disease (GD)
---
A/B
R
170
P
039
UniProt
VAR_032202
L
213
F
GLCM_HUMAN
Disease (GD)
---
A/B
L
174
F
040
UniProt
VAR_003270
A
215
D
GLCM_HUMAN
Disease (GD)
---
A/B
A
176
D
041
UniProt
VAR_003271
P
217
S
GLCM_HUMAN
Disease (GD)
---
A/B
P
178
S
042
UniProt
VAR_032405
P
221
L
GLCM_HUMAN
Disease (GD1)
---
A/B
P
182
L
043
UniProt
VAR_003272
P
221
T
GLCM_HUMAN
Disease (GD)
---
A/B
P
182
T
044
UniProt
VAR_003273
W
223
R
GLCM_HUMAN
Disease (GD)
---
A/B
W
184
R
045
UniProt
VAR_032203
L
224
F
GLCM_HUMAN
Disease (GD)
---
A/B
L
185
F
046
UniProt
VAR_003275
N
227
K
GLCM_HUMAN
Disease (GD)
381418
A/B
N
188
K
047
UniProt
VAR_003274
N
227
S
GLCM_HUMAN
Disease (GD)
364897
A/B
N
188
S
048
UniProt
VAR_010060
G
228
V
GLCM_HUMAN
Disease (GD)
---
A/B
G
189
V
049
UniProt
VAR_009038
A
229
E
GLCM_HUMAN
Disease (GD)
---
A/B
A
190
E
050
UniProt
VAR_032406
A
229
T
GLCM_HUMAN
Disease (GD)
---
A/B
A
190
T
051
UniProt
VAR_032407
V
230
E
GLCM_HUMAN
Disease (GD1)
---
A/B
V
191
E
052
UniProt
VAR_003276
V
230
G
GLCM_HUMAN
Disease (GD1)
381427
A/B
V
191
G
053
UniProt
VAR_032204
G
232
E
GLCM_HUMAN
Disease (GD)
---
A/B
G
193
E
054
UniProt
VAR_003277
G
234
E
GLCM_HUMAN
Disease (GD)
---
A/B
G
195
E
055
UniProt
VAR_009039
G
234
W
GLCM_HUMAN
Disease (GD)
---
A/B
G
195
W
056
UniProt
VAR_003278
S
235
P
GLCM_HUMAN
Disease (GD)
1064644
A/B
S
196
P
057
UniProt
VAR_032205
K
237
E
GLCM_HUMAN
Disease (GD)
---
A/B
K
198
E
058
UniProt
VAR_010061
G
241
E
GLCM_HUMAN
Disease (GD)
---
A/B
G
202
E
059
UniProt
VAR_003279
G
241
R
GLCM_HUMAN
Disease (GD)
---
A/B
G
202
R
060
UniProt
VAR_010062
Y
244
C
GLCM_HUMAN
Disease (GD)
---
A/B
Y
205
C
061
UniProt
VAR_003280
Y
251
H
GLCM_HUMAN
Disease (GD)
---
A/B
Y
212
H
062
UniProt
VAR_003281
F
252
I
GLCM_HUMAN
Disease (GD)
381737
A/B
F
213
I
063
UniProt
VAR_003282
F
255
Y
GLCM_HUMAN
Disease (GD)
---
A/B
F
216
Y
064
UniProt
VAR_032408
T
270
R
GLCM_HUMAN
Disease (GD)
---
A/B
T
231
R
065
UniProt
VAR_003283
S
276
P
GLCM_HUMAN
Disease (GD)
---
A/B
S
237
P
066
UniProt
VAR_032409
F
290
L
GLCM_HUMAN
Disease (GD)
---
A/B
F
251
L
067
UniProt
VAR_009040
H
294
Q
GLCM_HUMAN
Disease (GD1)
---
A/B
H
255
Q
068
UniProt
VAR_003284
R
296
Q
GLCM_HUMAN
Disease (GD)
---
A/B
R
257
Q
069
UniProt
VAR_009041
F
298
L
GLCM_HUMAN
Disease (GD)
---
A/B
F
259
L
070
UniProt
VAR_032206
L
303
I
GLCM_HUMAN
Disease (GD)
---
A/B
L
264
I
071
UniProt
VAR_010063
G
304
D
GLCM_HUMAN
Disease (GD)
---
A/B
G
265
D
072
UniProt
VAR_003285
P
305
R
GLCM_HUMAN
Disease (GD)
---
A/B
P
266
R
073
UniProt
VAR_032410
S
310
G
GLCM_HUMAN
Polymorphism
1057942
A/B
S
271
G
074
UniProt
VAR_010064
S
310
N
GLCM_HUMAN
Disease (GD)
---
A/B
S
271
N
075
UniProt
VAR_003286
R
324
C
GLCM_HUMAN
Disease (GD)
---
A/B
R
285
C
076
UniProt
VAR_009042
R
324
H
GLCM_HUMAN
Disease (GD)
---
A/B
R
285
H
077
UniProt
VAR_003287
P
328
L
GLCM_HUMAN
Disease (GD)
---
A/B
P
289
L
078
UniProt
VAR_003288
K
342
I
GLCM_HUMAN
Disease (GD)
---
A/B
K
303
I
079
UniProt
VAR_009043
Y
343
C
GLCM_HUMAN
Disease (GD)
---
A/B
Y
304
C
080
UniProt
VAR_003289
A
348
V
GLCM_HUMAN
Disease (GD)
---
A/B
A
309
V
081
UniProt
VAR_009044
H
350
R
GLCM_HUMAN
Unclassified
---
A/B
H
311
R
082
UniProt
VAR_003290
W
351
C
GLCM_HUMAN
Disease (GD)
---
A/B
W
312
C
083
UniProt
VAR_003291
Y
352
H
GLCM_HUMAN
Disease (GD)
---
A/B
Y
313
H
084
UniProt
VAR_003292
D
354
H
GLCM_HUMAN
Disease (GD)
---
A/B
D
315
H
085
UniProt
VAR_003293
A
357
D
GLCM_HUMAN
Disease (GD)
---
A/B
A
318
D
086
UniProt
VAR_003294
T
362
I
GLCM_HUMAN
Disease (GD)
---
A/B
T
323
I
087
UniProt
VAR_003295
L
363
P
GLCM_HUMAN
Disease (GD)
---
A/B
L
324
P
088
UniProt
VAR_003296
G
364
R
GLCM_HUMAN
Disease (GD)
---
A/B
G
325
R
089
UniProt
VAR_003297
E
365
K
GLCM_HUMAN
Disease (GD)
2230288
A/B
E
326
K
090
UniProt
VAR_032411
R
368
H
GLCM_HUMAN
Polymorphism
1064648
A/B
R
329
H
091
UniProt
VAR_009045
A
380
T
GLCM_HUMAN
Disease (GD)
---
A/B
A
341
T
092
UniProt
VAR_003298
C
381
G
GLCM_HUMAN
Disease (GD)
---
A/B
C
342
G
093
UniProt
VAR_032207
E
388
K
GLCM_HUMAN
Disease (GD)
---
A/B
E
349
K
094
UniProt
VAR_010065
V
391
L
GLCM_HUMAN
Disease (GD)
---
A/B
V
352
L
095
UniProt
VAR_010066
R
392
G
GLCM_HUMAN
Disease (GD)
---
A/B
R
353
G
096
UniProt
VAR_032208
R
392
W
GLCM_HUMAN
Disease (GD)
---
A/B
R
353
W
097
UniProt
VAR_003299
R
398
Q
GLCM_HUMAN
Disease (GD)
---
A/B
R
359
Q
098
UniProt
VAR_032412
M
400
I
GLCM_HUMAN
Disease (GD)
149487315
A/B
M
361
I
099
UniProt
VAR_032209
Y
402
C
GLCM_HUMAN
Disease (GD)
---
A/B
Y
363
C
100
UniProt
VAR_003300
S
403
T
GLCM_HUMAN
Disease (GD)
---
A/B
S
364
T
101
UniProt
VAR_010067
S
405
G
GLCM_HUMAN
Disease (GD)
---
A/B
S
366
G
102
UniProt
VAR_009046
S
405
N
GLCM_HUMAN
Disease (GD)
---
A/B
S
366
N
103
UniProt
VAR_003301
T
408
M
GLCM_HUMAN
Disease (GD)
2230289
A/B
T
369
M
104
UniProt
VAR_003302
N
409
S
GLCM_HUMAN
Disease (GD1)
76763715
A/B
N
370
S
105
UniProt
VAR_032210
L
410
V
GLCM_HUMAN
Disease (GD)
---
A/B
L
371
V
106
UniProt
VAR_010068
V
414
L
GLCM_HUMAN
Disease (GD)
---
A/B
V
375
L
107
UniProt
VAR_003303
G
416
S
GLCM_HUMAN
Disease (GD)
---
A/B
G
377
S
108
UniProt
VAR_003304
W
417
G
GLCM_HUMAN
Disease (GD)
---
A/B
W
378
G
109
UniProt
VAR_003305
D
419
A
GLCM_HUMAN
Disease (GD)
---
A/B
D
380
A
110
UniProt
VAR_032211
D
419
H
GLCM_HUMAN
Disease (GD)
---
A/B
D
380
H
111
UniProt
VAR_003306
D
419
N
GLCM_HUMAN
Disease (GD)
---
A/B
D
380
N
112
UniProt
VAR_032212
N
421
K
GLCM_HUMAN
Disease (GD)
---
A/B
N
382
K
113
UniProt
VAR_010069
P
426
L
GLCM_HUMAN
Disease (GD)
---
A/B
P
387
L
114
UniProt
VAR_003307
G
428
E
GLCM_HUMAN
Disease (GD)
---
A/B
G
389
E
115
UniProt
VAR_032213
G
429
R
GLCM_HUMAN
Disease (GD)
---
A/B
G
390
R
116
UniProt
VAR_003308
P
430
L
GLCM_HUMAN
Disease (GD)
---
A/B
P
391
L
117
UniProt
VAR_003309
N
431
I
GLCM_HUMAN
Disease (GD)
---
A/B
N
392
I
118
UniProt
VAR_009047
W
432
R
GLCM_HUMAN
Disease (GD)
---
A/B
W
393
R
119
UniProt
VAR_003310
V
433
L
GLCM_HUMAN
Disease (GD)
---
A/B
V
394
L
120
UniProt
VAR_003311
N
435
T
GLCM_HUMAN
Disease (GD1)
---
A/B
N
396
T
121
UniProt
VAR_032214
F
436
S
GLCM_HUMAN
Disease (GD)
---
A/B
F
397
S
122
UniProt
VAR_009048
V
437
F
GLCM_HUMAN
Unclassified
---
A/B
V
398
F
123
UniProt
VAR_010070
V
437
L
GLCM_HUMAN
Disease (GD3)
---
A/B
V
398
L
124
UniProt
VAR_003312
D
438
N
GLCM_HUMAN
Disease (GD)
---
A/B
D
399
N
125
UniProt
VAR_032413
D
438
Y
GLCM_HUMAN
Disease (GD)
---
A/B
D
399
Y
126
UniProt
VAR_010071
P
440
L
GLCM_HUMAN
Disease (GD1)
---
A/B
P
401
L
127
UniProt
VAR_032414
I
441
F
GLCM_HUMAN
Disease (GD)
---
A/B
I
402
F
128
UniProt
VAR_010072
I
441
T
GLCM_HUMAN
Disease (GD)
---
A/B
I
402
T
129
UniProt
VAR_003313
D
448
H
GLCM_HUMAN
Disease (GD)
1064651
A/B
D
409
H
130
UniProt
VAR_003314
D
448
V
GLCM_HUMAN
Disease (GD)
---
A/B
D
409
V
131
UniProt
VAR_010073
F
450
I
GLCM_HUMAN
Disease (GD)
---
A/B
F
411
I
132
UniProt
VAR_003315
Y
451
H
GLCM_HUMAN
Disease (GD)
---
A/B
Y
412
H
133
UniProt
VAR_010074
K
452
Q
GLCM_HUMAN
Disease (GD)
---
A/B
K
413
Q
134
UniProt
VAR_003316
P
454
R
GLCM_HUMAN
Disease (GD)
---
A/B
P
415
R
135
UniProt
VAR_032215
M
455
V
GLCM_HUMAN
Disease (GD)
---
A/B
M
416
V
136
UniProt
VAR_003317
F
456
V
GLCM_HUMAN
Disease (GD)
---
A/B
F
417
V
137
UniProt
VAR_003318
Y
457
C
GLCM_HUMAN
Disease (GD)
---
A/B
Y
418
C
138
UniProt
VAR_032415
G
460
D
GLCM_HUMAN
Disease (GD1)
---
A/B
G
421
D
139
UniProt
VAR_003319
K
464
E
GLCM_HUMAN
Disease (GD)
---
A/B
K
425
E
140
UniProt
VAR_063067
D
482
N
GLCM_HUMAN
Polymorphism
75671029
A/B
D
443
N
141
UniProt
VAR_003321
L
483
P
GLCM_HUMAN
Disease (GD2)
---
A/B
L
444
P
142
UniProt
VAR_003320
L
483
R
GLCM_HUMAN
Disease (GD)
---
A/B
L
444
R
143
UniProt
VAR_003322
A
485
P
GLCM_HUMAN
Disease (GD)
---
A/B
A
446
P
144
UniProt
VAR_032416
H
490
R
GLCM_HUMAN
Disease (GD)
---
A/B
H
451
R
145
UniProt
VAR_003323
A
495
P
GLCM_HUMAN
Disease (GD)
368060
A/B
A
456
P
146
UniProt
VAR_063068
V
497
L
GLCM_HUMAN
Polymorphism
---
A/B
V
458
L
147
UniProt
VAR_032216
L
500
P
GLCM_HUMAN
Disease (GD)
---
A/B
L
461
P
148
UniProt
VAR_009049
N
501
K
GLCM_HUMAN
Disease (GD)
---
A/B
N
462
K
149
UniProt
VAR_003324
R
502
C
GLCM_HUMAN
Disease (GD)
---
A/B
R
463
C
150
UniProt
VAR_032217
R
502
P
GLCM_HUMAN
Disease (GD)
---
A/B
R
463
P
151
UniProt
VAR_003325
L
509
P
GLCM_HUMAN
Polymorphism
---
A/B
L
470
P
152
UniProt
VAR_009050
D
513
Y
GLCM_HUMAN
Disease (GD2)
---
A/B
D
474
Y
153
UniProt
VAR_003326
G
517
S
GLCM_HUMAN
Disease (GD)
---
A/B
G
478
S
154
UniProt
VAR_010075
T
530
I
GLCM_HUMAN
Disease (GD3)
---
A/B
T
491
I
155
UniProt
VAR_003327
R
535
C
GLCM_HUMAN
Disease (GD)
---
A/B
R
496
C
156
UniProt
VAR_003328
R
535
H
GLCM_HUMAN
Disease (GD)
---
A/B
R
496
H
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(9, 18)
Info
All Exons
Exon 1.6c (A:1-64 | B:1-64)
Exon 1.7b (A:64-113 | B:64-113)
Exon 1.8e (A:113-157 | B:113-157)
Exon 1.9b (A:158-215 | B:158-215)
Exon 1.10 (A:215-294 | B:215-294)
Exon 1.11b (A:295-369 | B:295-369)
Exon 1.12a (A:370-424 | B:370-424)
Exon 1.12d (A:424-463 | B:424-463)
Exon 1.13d (A:463-497 | B:463-497)
View:
Select:
Label:
All Exon Boundaries
01: Boundary 1.4a/1.6c
02: Boundary 1.6c/1.7b
03: Boundary 1.7b/1.8e
04: Boundary 1.8e/1.9b
05: Boundary 1.9b/1.10
06: Boundary 1.10/1.11b
07: Boundary 1.11b/1.12a
08: Boundary 1.12a/1.12d
09: Boundary 1.12d/1.13d
10: Boundary 1.13d/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.3b
ENST00000368373
3b
ENSE00001890492
chr1:
155211025-155210877
149
GLCM_HUMAN
1-9
9
0
-
-
1.4a
ENST00000368373
4a
ENSE00001231103
chr1:
155210508-155210421
88
GLCM_HUMAN
10-39
30
0
-
-
1.6c
ENST00000368373
6c
ENSE00001231096
chr1:
155209868-155209677
192
GLCM_HUMAN
39-103
65
2
A:1-64
B:1-64
64
64
1.7b
ENST00000368373
7b
ENSE00001231088
chr1:
155209553-155209407
147
GLCM_HUMAN
103-152
50
2
A:64-113
B:64-113
50
50
1.8e
ENST00000368373
8e
ENSE00001775630
chr1:
155208441-155208308
134
GLCM_HUMAN
152-196
45
2
A:113-157
B:113-157
45
45
1.9b
ENST00000368373
9b
ENSE00001697320
chr1:
155208097-155207925
173
GLCM_HUMAN
197-254
58
2
A:158-215
B:158-215
58
58
1.10
ENST00000368373
10
ENSE00001667013
chr1:
155207369-155207132
238
GLCM_HUMAN
254-333
80
2
A:215-294
B:215-294
80
80
1.11b
ENST00000368373
11b
ENSE00001231060
chr1:
155206260-155206036
225
GLCM_HUMAN
334-408
75
2
A:295-369
B:295-369
75
75
1.12a
ENST00000368373
12a
ENSE00001231052
chr1:
155205635-155205472
164
GLCM_HUMAN
409-463
55
2
A:370-424
B:370-424
55
55
1.12d
ENST00000368373
12d
ENSE00001780706
chr1:
155205102-155204986
117
GLCM_HUMAN
463-502
40
2
A:424-463
B:424-463
40
40
1.13d
ENST00000368373
13d
ENSE00001917720
chr1:
155204891-155204243
649
GLCM_HUMAN
502-536
35
2
A:463-497
B:463-497
35
35
[
close EXON info
]
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1y7va1 (A:1-77,A:432-497)
1b: SCOP_d1y7vb1 (B:1-77,B:432-497)
2a: SCOP_d1y7va2 (A:78-431)
2b: SCOP_d1y7vb2 (B:78-431)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Glycosyl hydrolase domain
(397)
Superfamily
:
Glycosyl hydrolase domain
(397)
Family
:
Composite domain of glycosyl hydrolase families 5, 30, 39 and 51
(30)
Protein domain
:
Glucosylceramidase
(17)
Human (Homo sapiens) [TaxId: 9606]
(17)
1a
d1y7va1
A:1-77,A:432-497
1b
d1y7vb1
B:1-77,B:432-497
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
(Trans)glycosidases
(1191)
Family
:
beta-glycanases
(284)
Protein domain
:
Glucosylceramidase, catalytic domain
(17)
Human (Homo sapiens) [TaxId: 9606]
(17)
2a
d1y7va2
A:78-431
2b
d1y7vb2
B:78-431
[
close SCOP info
]
CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1y7vA01 (A:5-30,A:78-431)
1b: CATH_1y7vB01 (B:5-30,B:78-431)
2a: CATH_1y7vA02 (A:35-77,A:432-497)
2b: CATH_1y7vB02 (B:35-77,B:432-497)
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Alpha Beta
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Alpha-Beta Barrel
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1a
1y7vA01
A:5-30,A:78-431
1b
1y7vB01
B:5-30,B:78-431
Class
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Mainly Beta
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Immunoglobulin-like
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Golgi alpha-mannosidase II
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Human (Homo sapiens)
(76)
2a
1y7vA02
A:35-77,A:432-497
2b
1y7vB02
B:35-77,B:432-497
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