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1Y6L
Asym. Unit
Info
Asym.Unit (82 KB)
Biol.Unit 1 (27 KB)
Biol.Unit 2 (27 KB)
Biol.Unit 3 (27 KB)
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(1)
Title
:
HUMAN UBIQUITIN CONJUGATING ENZYME E2E2
Authors
:
J. R. Walker, G. V. Avvakumov, E. M. Newman, F. Mackenzie, I. Kozieradzk A. Bochkarev, M. Sundstrom, C. Arrowsmith, A. Edwards, S. Dhe-Pagano Structural Genomics Consortium (Sgc)
Date
:
06 Dec 04 (Deposition) - 11 Jan 05 (Release) - 28 Nov 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.85
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Keywords
:
Structural Genomics Consortium, Ubiquitin, Ubiquitin-Conjugating Enzyme, Ligase, Sgc
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Sheng, J. H. Hong, R. Doherty, T. Srikumar, J. Shloush, G. V. Avvakumov, J. R. Walker, S. Xue, D. Neculai, J. W. Wan, S. K. Kim, C. H. Arrowsmith, B. Raught, S. Dhe-Paganon
A Human Ubiquitin Conjugating Enzyme (E2)-Hect E3 Ligase Structure-Function Screen.
Mol Cell Proteomics V. 11 329 2012
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Hetero Components
(0, 0)
Info
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Sorry, no Info available
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Sites
(0, 0)
Info
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(2, 6)
Info
All PROSITE Patterns/Profiles
1: UBIQUITIN_CONJUGAT_2 (A:4-136,B:4-136,C:4-136)
2: UBIQUITIN_CONJUGAT_1 (A:74-89,B:74-89,C:74-89)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
UBIQUITIN_CONJUGAT_2
PS50127
Ubiquitin-conjugating enzymes family profile.
UB2E2_HUMAN
58-190
3
A:4-136
B:4-136
C:4-136
2
UBIQUITIN_CONJUGAT_1
PS00183
Ubiquitin-conjugating enzymes active site.
UB2E2_HUMAN
128-143
3
A:74-89
B:74-89
C:74-89
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Exons
(5, 15)
Info
All Exons
Exon 1.3a (A:0-5 | B:0-5 | C:0-5)
Exon 1.4 (A:5-22 | B:5-22 | C:5-22)
Exon 1.7 (A:22-66 | B:22-66 | C:22-66)
Exon 1.8b (A:67-116 | B:67-116 | C:67-116)
Exon 1.9d (A:116-147 | B:116-147 | C:116-147)
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All Exon Boundaries
1: Boundary 1.2a/1.3a
2: Boundary 1.3a/1.4
3: Boundary 1.4/1.7
4: Boundary 1.7/1.8b
5: Boundary 1.8b/1.9d
6: Boundary 1.9d/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2a
ENST00000396703
2a
ENSE00001525976
chr3:
23244784-23244955
172
UB2E2_HUMAN
-
0
0
-
-
1.3a
ENST00000396703
3a
ENSE00001525974
chr3:
23250183-23250366
184
UB2E2_HUMAN
1-59
59
3
A:0-5
B:0-5
C:0-5
6
6
6
1.4
ENST00000396703
4
ENSE00001648562
chr3:
23258753-23258803
51
UB2E2_HUMAN
59-76
18
3
A:5-22
B:5-22
C:5-22
18
18
18
1.7
ENST00000396703
7
ENSE00001730682
chr3:
23541099-23541231
133
UB2E2_HUMAN
76-120
45
3
A:22-66
B:22-66
C:22-66
45
45
45
1.8b
ENST00000396703
8b
ENSE00001629049
chr3:
23574045-23574192
148
UB2E2_HUMAN
121-170
50
3
A:67-116
B:67-116
C:67-116
50
50
50
1.9d
ENST00000396703
9d
ENSE00001525971
chr3:
23631225-23633284
2060
UB2E2_HUMAN
170-201
32
3
A:116-147
B:116-147
C:116-147
32
32
32
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SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d1y6la_ (A:)
1b: SCOP_d1y6lb_ (B:)
1c: SCOP_d1y6lc_ (C:)
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Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
UBC-like
(176)
Superfamily
:
UBC-like
(176)
Family
:
UBC-related
(135)
Protein domain
:
Ubiquitin conjugating enzyme, UBC
(84)
Human (Homo sapiens), ubch8 [TaxId: 9606]
(1)
1a
d1y6la_
A:
1b
d1y6lb_
B:
1c
d1y6lc_
C:
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CATH Domains
(1, 3)
Info
all CATH domains
1a: CATH_1y6lA00 (A:0-147)
1b: CATH_1y6lB00 (B:0-147)
1c: CATH_1y6lC00 (C:0-147)
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Class
:
Alpha Beta
(26913)
Architecture
:
Roll
(3276)
Topology
:
Ubiquitin Conjugating Enzyme
(83)
Homologous Superfamily
:
Ubiquitin Conjugating Enzyme
(83)
Human (Homo sapiens)
(49)
1a
1y6lA00
A:0-147
1b
1y6lB00
B:0-147
1c
1y6lC00
C:0-147
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Pfam Domains
(1, 3)
Info
all PFAM domains
1a: PFAM_UQ_con_1y6lC01 (C:5-142)
1b: PFAM_UQ_con_1y6lC02 (C:5-142)
1c: PFAM_UQ_con_1y6lC03 (C:5-142)
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Clan
:
UBC
(69)
Family
:
UQ_con
(55)
Homo sapiens (Human)
(36)
1a
UQ_con-1y6lC01
C:5-142
1b
UQ_con-1y6lC02
C:5-142
1c
UQ_con-1y6lC03
C:5-142
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (82 KB)
Header - Asym.Unit
Biol.Unit 1 (27 KB)
Header - Biol.Unit 1
Biol.Unit 2 (27 KB)
Header - Biol.Unit 2
Biol.Unit 3 (27 KB)
Header - Biol.Unit 3
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