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1Y64
Asym. Unit
Info
Asym.Unit (124 KB)
Biol.Unit 1 (117 KB)
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(1)
Title
:
BNI1P FORMIN HOMOLOGY 2 DOMAIN COMPLEXED WITH ATP-ACTIN
Authors
:
T. Otomo, D. R. Tomchick, C. Otomo, S. C. Panchal, M. Machius, M. K. Rosen
Date
:
03 Dec 04 (Deposition) - 18 Jan 05 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.05
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Fh2 Actin Cytoskeleton, Coiled Coil, Actin, Tetramethylrhodamine-5-Maleimide, Atp-State, Structural Protein
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
T. Otomo, D. R. Tomchick, C. Otomo, S. C. Panchal, M. Machius, M. K. Rosen
Structural Basis Of Actin Filament Nucleation And Processive Capping By A Formin Homology 2 Domain
Nature V. 433 488 2005
(for further references see the
PDB file header
)
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Hetero Components
(3, 3)
Info
All Hetero Components
1a: ADENOSINE-5'-TRIPHOSPHATE (ATPa)
2a: CALCIUM ION (CAa)
3a: 4-METHYL-HISTIDINE (HICa)
View:
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Label:
No.
Name
Count
Type
Full Name
1
ATP
1
Ligand/Ion
ADENOSINE-5'-TRIPHOSPHATE
2
CA
1
Ligand/Ion
CALCIUM ION
3
HIC
1
Mod. Amino Acid
4-METHYL-HISTIDINE
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLN A:137 , ATP A:2000
BINDING SITE FOR RESIDUE CA A 382
2
AC2
SOFTWARE
GLY A:13 , SER A:14 , GLY A:15 , LEU A:16 , LYS A:18 , GLY A:156 , ASP A:157 , GLY A:158 , VAL A:159 , GLY A:182 , LYS A:213 , GLU A:214 , GLY A:302 , THR A:303 , MET A:305 , TYR A:306 , CA A:382
BINDING SITE FOR RESIDUE ATP A 2000
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: ACTINS_1 (A:53-63)
2: ACTINS_ACT_LIKE (A:104-116)
3: ACTINS_2 (A:356-364)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ACTINS_1
PS00406
Actins signature 1.
ACTS_RABIT
55-65
1
A:53-63
2
ACTINS_ACT_LIKE
PS01132
Actins and actin-related proteins signature.
ACTS_RABIT
106-118
1
A:104-116
3
ACTINS_2
PS00432
Actins signature 2.
ACTS_RABIT
358-366
1
A:356-364
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Exons
(1, 1)
Info
All Exons
Exon 1.1 (B:1350-1760)
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
YNL271C
1
YNL271C.1
XIV:135384-129523
5862
BNI1_YEAST
1-1953
1953
1
B:1350-1760
411
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SCOP Domains
(3, 3)
Info
All SCOP Domains
1a: SCOP_d1y64b_ (B:)
2a: SCOP_d1y64a2 (A:147-372)
3a: SCOP_d1y64a1 (A:4-146)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Formin homology 2 domain (FH2 domain)
(4)
Superfamily
:
Formin homology 2 domain (FH2 domain)
(4)
Family
:
Formin homology 2 domain (FH2 domain)
(4)
Protein domain
:
Bni1
(3)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(3)
1a
d1y64b_
B:
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Ribonuclease H-like motif
(1424)
Superfamily
:
Actin-like ATPase domain
(426)
Family
:
Actin/HSP70
(199)
Protein domain
:
automated matches
(47)
Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
(9)
2a
d1y64a2
A:147-372
Family
:
automated matches
(111)
Protein domain
:
automated matches
(111)
Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
(8)
3a
d1y64a1
A:4-146
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CATH Domains
(2, 3)
Info
all CATH domains
1a: CATH_1y64A01 (A:4-137,A:339-372)
1b: CATH_1y64A02 (A:138-179,A:272-338)
2a: CATH_1y64A03 (A:180-271)
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)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Nucleotidyltransferase; domain 5
(788)
Homologous Superfamily
:
[code=3.30.420.40, no name defined]
(217)
Rabbit (Oryctolagus cuniculus)
(44)
1a
1y64A01
A:4-137,A:339-372
1b
1y64A02
A:138-179,A:272-338
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Actin; Chain A, domain 4
(156)
Homologous Superfamily
:
Actin; Chain A, domain 4
(155)
Rabbit (Oryctolagus cuniculus)
(44)
2a
1y64A03
A:180-271
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Pfam Domains
(2, 2)
Info
all PFAM domains
1a: PFAM_Actin_1y64A01 (A:4-372)
2a: PFAM_FH2_1y64B01 (B:1350-1741)
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Clan
:
Actin_ATPase
(173)
Family
:
Actin
(70)
Oryctolagus cuniculus (Rabbit)
(47)
1a
Actin-1y64A01
A:4-372
Clan
:
no clan defined [family: FH2]
(7)
Family
:
FH2
(7)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Bakers yeast)
(3)
2a
FH2-1y64B01
B:1350-1741
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Asymmetric Unit 1
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