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1Y4L
Asym. Unit
Info
Asym.Unit (53 KB)
Biol.Unit 1 (46 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF BOTHROPS ASPER MYOTOXIN II COMPLEXED WITH THE ANTI-TRYPANOSOMAL DRUG SURAMIN
Authors
:
M. T. Murakami, E. Z. Arruda, P. A. Melo, A. B. Martinez, S. Calil-Elias, M. A. Tomaz, B. Lomonte, J. M. Gutierrez, R. K. Arni
Date
:
01 Dec 04 (Deposition) - 28 Jun 05 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Bothrops Asper Myotoxin Ii, Anti-Trypanosomal Drug Suramin, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. T. Murakami, E. Z. Arruda, P. A. Melo, A. B. Martinez, S. Calil-Elias M. A. Tomaz, B. Lomonte, J. M. Gutierrez, R. K. Arni
Inhibition Of Myotoxic Activity Of Bothrops Asper Myotoxin Ii By The Anti-Trypanosomal Drug Suramin.
J. Mol. Biol. V. 350 416 2005
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Hetero Components
(3, 8)
Info
All Hetero Components
1a: ISOPROPYL ALCOHOL (IPAa)
1b: ISOPROPYL ALCOHOL (IPAb)
1c: ISOPROPYL ALCOHOL (IPAc)
1d: ISOPROPYL ALCOHOL (IPAd)
1e: ISOPROPYL ALCOHOL (IPAe)
2a: 3,6,9,12,15,18-HEXAOXAICOSANE-1,20... (P33a)
2b: 3,6,9,12,15,18-HEXAOXAICOSANE-1,20... (P33b)
3a: 8,8'-[CARBONYLBIS[IMINO-3,1-PHENYL... (SVRa)
View:
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Label:
No.
Name
Count
Type
Full Name
1
IPA
5
Ligand/Ion
ISOPROPYL ALCOHOL
2
P33
2
Ligand/Ion
3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL
3
SVR
1
Ligand/Ion
8,8'-[CARBONYLBIS[IMINO-3,1-PHENYLENECARBONYLIMINO(4-METHYL-3,1-PHENYLENE)CARBONYLIMINO]]BIS-1,3,5-NAPHTHALENETRISULFONIC ACID
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LEU A:2 , GLY A:30 , VAL A:31 , LEU A:32 , GLY A:33 , ARG A:34 , LYS A:49 , TYR A:52 , LYS A:53 , PRO A:68 , LYS A:69 , LYS A:70 , P33 A:401 , HOH A:525 , LEU B:2 , LEU B:5 , GLY B:30 , VAL B:31 , ARG B:34 , HIS B:48 , LYS B:49 , TYR B:52 , LYS B:53 , LYS B:69 , LYS B:70 , LYS B:93 , P33 B:402
BINDING SITE FOR RESIDUE SVR B 301
2
AC2
SOFTWARE
LEU A:2 , GLY A:6 , LYS A:7 , LEU A:10 , PRO A:17 , TYR A:22 , ASN A:28 , CYS A:29 , GLY A:30 , CYS A:45 , HIS A:48 , LYS A:49 , SVR B:301
BINDING SITE FOR RESIDUE P33 A 401
3
AC3
SOFTWARE
LEU B:2 , GLY B:6 , LYS B:7 , LEU B:10 , PRO B:17 , TYR B:22 , ASN B:28 , CYS B:29 , GLY B:30 , CYS B:45 , HIS B:48 , LYS B:49 , SVR B:301
BINDING SITE FOR RESIDUE P33 B 402
4
AC4
SOFTWARE
HOH A:550 , LEU B:58 , THR B:59 , SER B:90 , GLU B:94
BINDING SITE FOR RESIDUE IPA B 501
5
AC5
SOFTWARE
ASN B:16 , LYS B:19 , SER B:20 , IPA B:505
BINDING SITE FOR RESIDUE IPA B 502
6
AC6
SOFTWARE
LYS A:19 , LYS A:115 , ARG A:118
BINDING SITE FOR RESIDUE IPA A 503
7
AC7
SOFTWARE
ASN A:16 , LYS A:19 , HOH A:582 , HOH A:602
BINDING SITE FOR RESIDUE IPA A 504
8
AC8
SOFTWARE
LYS B:19 , LYS B:115 , ARG B:118 , IPA B:502
BINDING SITE FOR RESIDUE IPA B 505
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SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_PA2H2_BOTAS_001 (L124F, chain A/B, )
View:
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_PA2H2_BOTAS_001
*
L
130
F
PA2H2_BOTAS
---
---
A/B
L
124
F
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: PA2_HIS (A:44-51,B:44-51)
2: PA2_ASP (A:95-105,B:95-105)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PA2_HIS
PS00118
Phospholipase A2 histidine active site.
PA2H2_BOTAS
59-66
2
A:44-51
B:44-51
2
PA2_ASP
PS00119
Phospholipase A2 aspartic acid active site.
PA2H2_BOTAS
101-111
2
A:95-105
B:95-105
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1y4la_ (A:)
1b: SCOP_d1y4lb_ (B:)
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Class
:
All alpha proteins
(14657)
Fold
:
Phospholipase A2, PLA2
(282)
Superfamily
:
Phospholipase A2, PLA2
(282)
Family
:
Vertebrate phospholipase A2
(271)
Protein domain
:
Snake phospholipase A2
(124)
Terciopelo (Bothrops asper), myotoxin I [TaxId: 8722]
(2)
1a
d1y4la_
A:
1b
d1y4lb_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1y4lA00 (A:1-133)
1b: CATH_1y4lB00 (B:1-133)
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Organisms
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Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Phospholipase A2
(241)
Homologous Superfamily
:
Phospholipase A2
(241)
Terciopelo (Bothrops asper)
(2)
1a
1y4lA00
A:1-133
1b
1y4lB00
B:1-133
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Phospholip_A2_1_1y4lB01 (B:1-133)
1b: PFAM_Phospholip_A2_1_1y4lB02 (B:1-133)
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Clan
:
no clan defined [family: Phospholip_A2_1]
(33)
Family
:
Phospholip_A2_1
(33)
Bothrops asper (Terciopelo)
(1)
1a
Phospholip_A2_1-1y4lB01
B:1-133
1b
Phospholip_A2_1-1y4lB02
B:1-133
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Asymmetric Unit 1
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Asym.Unit (53 KB)
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