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1Y4H
Biol. Unit 1
Info
Asym.Unit (103 KB)
Biol.Unit 1 (51 KB)
Biol.Unit 2 (50 KB)
Biol.Unit 3 (98 KB)
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(1)
Title
:
WILD TYPE STAPHOPAIN-STAPHOSTATIN COMPLEX
Authors
:
R. Filipek, J. Potempa, M. Bochtler
Date
:
30 Nov 04 (Deposition) - 18 Jan 05 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.93
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,C (1x)
Biol. Unit 2: B,D (1x)
Biol. Unit 3: A,B,C,D (1x)
Keywords
:
Cysteine Protease, Inhibitor, Staphopain B, Staphostatin B, Hydrolase-Hydrolase Inhibitor Complex
(Keyword Search:
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Reference
:
R. Filipek, J. Potempa, M. Bochtler
A Comparison Of Staphostatin B With Standard Mechanism Serine Protease Inhibitors.
J. Biol. Chem. V. 280 14669 2005
(for further references see the
PDB file header
)
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Hetero Components
(1, 4)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
2e: SULFATE ION (SO4e)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CL
-1
Ligand/Ion
CHLORIDE ION
2
SO4
4
Ligand/Ion
SULFATE ION
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Sites
(7, 7)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC3 (SOFTWARE)
3: AC4 (SOFTWARE)
4: AC6 (SOFTWARE)
5: AC7 (SOFTWARE)
6: AC8 (SOFTWARE)
7: AC9 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS C:50
BINDING SITE FOR RESIDUE CL C 450
2
AC3
SOFTWARE
HIS C:18 , HOH C:480
BINDING SITE FOR RESIDUE CL C 452
3
AC4
SOFTWARE
HIS A:337
BINDING SITE FOR RESIDUE CL A 453
4
AC6
SOFTWARE
LYS A:232 , ARG A:234
BINDING SITE FOR RESIDUE SO4 A 461
5
AC7
SOFTWARE
THR C:22 , ASN C:25 , HOH C:473
BINDING SITE FOR RESIDUE SO4 C 462
6
AC8
SOFTWARE
LYS A:256 , ARG A:298
BINDING SITE FOR RESIDUE SO4 A 463
7
AC9
SOFTWARE
ARG C:101
BINDING SITE FOR RESIDUE SO4 C 464
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: THIOL_PROTEASE_HIS (A:338-348)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
THIOL_PROTEASE_HIS
PS00639
Eukaryotic thiol (cysteine) proteases histidine active site.
SSPB_STAA8
338-348
1
A:338-348
-
SSPB_STAAU
338-348
1
A:338-348
-
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1y4hc_ (C:)
1b: SCOP_d1y4hd_ (D:)
2a: SCOP_d1y4ha1 (A:221-393)
2b: SCOP_d1y4hb_ (B:)
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Protein Domains
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)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Streptavidin-like
(225)
Superfamily
:
beta-Barrel protease inhibitors
(7)
Family
:
Staphostatin
(5)
Protein domain
:
Staphostatin B (SspC)
(4)
Staphylococcus aureus [TaxId: 1280]
(4)
1a
d1y4hc_
C:
1b
d1y4hd_
D:
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Cysteine proteinases
(392)
Superfamily
:
Cysteine proteinases
(392)
Family
:
Papain-like
(200)
Protein domain
:
Staphopain SspB
(3)
Staphylococcus aureus [TaxId: 1280]
(3)
2a
d1y4ha1
A:221-393
2b
d1y4hb_
B:
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1y4hA00 (A:221-393)
1b: CATH_1y4hB00 (B:221-393)
2a: CATH_1y4hC00 (C:1-109)
2b: CATH_1y4hD00 (D:1-109)
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Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Cathepsin B; Chain A
(207)
Homologous Superfamily
:
Cysteine proteinases
(207)
Staphylococcus aureus. Organism_taxid: 1280.
(3)
1a
1y4hA00
A:221-393
1b
1y4hB00
B:221-393
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Staphostatins
(5)
Homologous Superfamily
:
Staphostatins
(5)
Staphylococcus aureus. Organism_taxid: 1280.
(2)
2a
1y4hC00
C:1-109
2b
1y4hD00
D:1-109
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_Peptidase_C47_1y4hB01 (B:221-393)
1b: PFAM_Peptidase_C47_1y4hB02 (B:221-393)
2a: PFAM_Staphostatin_B_1y4hD01 (D:1-107)
2b: PFAM_Staphostatin_B_1y4hD02 (D:1-107)
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)
Clan
:
Peptidase_CA
(169)
Family
:
Peptidase_C47
(3)
Staphylococcus aureus
(3)
1a
Peptidase_C47-1y4hB01
B:221-393
1b
Peptidase_C47-1y4hB02
B:221-393
Clan
:
bBprotInhib
(5)
Family
:
Staphostatin_B
(4)
Staphylococcus aureus (strain NCTC 8325)
(2)
2a
Staphostatin_B-1y4hD01
D:1-107
2b
Staphostatin_B-1y4hD02
D:1-107
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (103 KB)
Header - Asym.Unit
Biol.Unit 1 (51 KB)
Header - Biol.Unit 1
Biol.Unit 2 (50 KB)
Header - Biol.Unit 2
Biol.Unit 3 (98 KB)
Header - Biol.Unit 3
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