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1Y3A
Biol. Unit 1
Info
Asym.Unit (217 KB)
Biol.Unit 1 (205 KB)
Biol.Unit 2 (6 KB)
Biol.Unit 3 (6 KB)
Biol.Unit 4 (6 KB)
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(1)
Title
:
STRUCTURE OF G-ALPHA-I1 BOUND TO A GDP-SELECTIVE PEPTIDE PROVIDES INSIGHT INTO GUANINE NUCLEOTIDE EXCHANGE
Authors
:
C. A. Johnston, F. S. Willard, M. R. Jezyk, Z. Fredericks, E. T. Bodor, M. B. Jones, R. Blaesius, T. K. Harden, J. Sondek, V. J. Watts, J. K. Ramer, D. P. Siderovski
Date
:
24 Nov 04 (Deposition) - 12 Jul 05 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D,E (1x)
Biol. Unit 2: F (1x)
Biol. Unit 3: G (1x)
Biol. Unit 4: H (1x)
Keywords
:
Protein-Peptide Complex, Signaling Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. A. Johnston, F. S. Willard, M. R. Jezyk, Z. Fredericks, E. T. Bodor, M. B. Jones, R. Blaesius, V. J. Watts, T. K. Harden, J. Sondek, J. K. Ramer, D. P. Siderovski
Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide Provides Insight Into Guanine Nucleotide Exchange
Structure V. 7 1069 2005
(for further references see the
PDB file header
)
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Hetero Components
(1, 4)
Info
All Hetero Components
1a: GUANOSINE-5'-DIPHOSPHATE (GDPa)
1b: GUANOSINE-5'-DIPHOSPHATE (GDPb)
1c: GUANOSINE-5'-DIPHOSPHATE (GDPc)
1d: GUANOSINE-5'-DIPHOSPHATE (GDPd)
View:
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Label:
No.
Name
Count
Type
Full Name
1
GDP
4
Ligand/Ion
GUANOSINE-5'-DIPHOSPHATE
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLY A:42 , GLU A:43 , SER A:44 , GLY A:45 , LYS A:46 , SER A:47 , THR A:48 , ASP A:150 , LEU A:175 , ARG A:176 , ARG A:178 , ASN A:269 , LYS A:270 , ASP A:272 , LEU A:273 , CYS A:325 , ALA A:326 , THR A:327 , HOH A:358 , HOH A:372
BINDING SITE FOR RESIDUE GDP A 355
2
AC2
SOFTWARE
GLU B:43 , SER B:44 , GLY B:45 , LYS B:46 , SER B:47 , THR B:48 , ASP B:150 , LEU B:175 , ARG B:176 , THR B:177 , ARG B:178 , ASN B:269 , LYS B:270 , ASP B:272 , LEU B:273 , CYS B:325 , ALA B:326 , THR B:327 , HOH B:358 , HOH B:365 , HOH B:366
BINDING SITE FOR RESIDUE GDP B 356
3
AC3
SOFTWARE
GLY C:42 , GLU C:43 , SER C:44 , GLY C:45 , LYS C:46 , SER C:47 , THR C:48 , ASP C:150 , LEU C:175 , ARG C:176 , THR C:177 , ARG C:178 , ASN C:269 , LYS C:270 , ASP C:272 , LEU C:273 , CYS C:325 , ALA C:326 , THR C:327 , HOH C:362 , HOH C:367
BINDING SITE FOR RESIDUE GDP C 357
4
AC4
SOFTWARE
GLY D:42 , GLU D:43 , SER D:44 , GLY D:45 , LYS D:46 , SER D:47 , THR D:48 , ASP D:150 , LEU D:175 , ARG D:176 , THR D:177 , ARG D:178 , ASN D:269 , LYS D:270 , ASP D:272 , LEU D:273 , CYS D:325 , ALA D:326 , THR D:327 , HOH D:372 , HOH D:374
BINDING SITE FOR RESIDUE GDP D 358
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d1y3aa1 (A:61-181)
1b: SCOP_d1y3ab1 (B:61-181)
1c: SCOP_d1y3ac1 (C:61-181)
1d: SCOP_d1y3ad1 (D:61-181)
2a: SCOP_d1y3aa2 (A:34-60,A:182-345)
2b: SCOP_d1y3ab2 (B:34-60,B:182-344)
2c: SCOP_d1y3ac2 (C:34-60,C:182-344)
2d: SCOP_d1y3ad2 (D:34-60,D:182-344)
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Transducin (alpha subunit), insertion domain
(49)
Superfamily
:
Transducin (alpha subunit), insertion domain
(49)
Family
:
Transducin (alpha subunit), insertion domain
(49)
Protein domain
:
Transducin (alpha subunit), insertion domain
(49)
Human (Homo sapiens) [TaxId: 9606]
(7)
1a
d1y3aa1
A:61-181
1b
d1y3ab1
B:61-181
1c
d1y3ac1
C:61-181
1d
d1y3ad1
D:61-181
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
G proteins
(693)
Protein domain
:
Transducin (alpha subunit)
(51)
Human (Homo sapiens) [TaxId: 9606]
(7)
2a
d1y3aa2
A:34-60,A:182-345
2b
d1y3ab2
B:34-60,B:182-344
2c
d1y3ac2
C:34-60,C:182-344
2d
d1y3ad2
D:34-60,D:182-344
[
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CATH Domains
(2, 8)
Info
all CATH domains
1a: CATH_1y3aB01 (B:34-61,B:181-343)
1b: CATH_1y3aD01 (D:34-61,D:181-343)
1c: CATH_1y3aA01 (A:34-61,A:181-343)
1d: CATH_1y3aC01 (C:34-61,C:181-343)
2a: CATH_1y3aB02 (B:62-180)
2b: CATH_1y3aD02 (D:62-180)
2c: CATH_1y3aA02 (A:62-180)
2d: CATH_1y3aC02 (C:62-180)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
Human (Homo sapiens)
(413)
1a
1y3aB01
B:34-61,B:181-343
1b
1y3aD01
D:34-61,D:181-343
1c
1y3aA01
A:34-61,A:181-343
1d
1y3aC01
C:34-61,C:181-343
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
GI Alpha 1, domain 2-like
(67)
Homologous Superfamily
:
GI Alpha 1, domain 2-like
(66)
Human (Homo sapiens)
(13)
2a
1y3aB02
B:62-180
2b
1y3aD02
D:62-180
2c
1y3aA02
A:62-180
2d
1y3aC02
C:62-180
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_G_alpha_1y3aD01 (D:34-344)
1b: PFAM_G_alpha_1y3aD02 (D:34-344)
1c: PFAM_G_alpha_1y3aD03 (D:34-344)
1d: PFAM_G_alpha_1y3aD04 (D:34-344)
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Clan
:
P-loop_NTPase
(1112)
Family
:
G-alpha
(24)
Homo sapiens (Human)
(6)
1a
G-alpha-1y3aD01
D:34-344
1b
G-alpha-1y3aD02
D:34-344
1c
G-alpha-1y3aD03
D:34-344
1d
G-alpha-1y3aD04
D:34-344
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (217 KB)
Header - Asym.Unit
Biol.Unit 1 (205 KB)
Header - Biol.Unit 1
Biol.Unit 2 (6 KB)
Header - Biol.Unit 2
Biol.Unit 3 (6 KB)
Header - Biol.Unit 3
Biol.Unit 4 (6 KB)
Header - Biol.Unit 4
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