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1Y2W
Biol. Unit 1
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Asym.Unit (55 KB)
Biol.Unit 1 (98 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE ORTHORHOMBIC FORM OF THE COMMON EDIBLE MUSHROOM (AGARICUS BISPORUS) LECTIN IN COMPLEX WITH T-ANTIGEN AND N-ACETYLGLUCOSAMINE
Authors
:
M. E. Carrizo, S. Capaldi, M. Perduca, F. J. Irazoqui, G. A. Nores, H. L. M
Date
:
23 Nov 04 (Deposition) - 21 Dec 04 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.74
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (2x)
Keywords
:
Abl, Agaricus Bisporus, Lectin, Mushroom, T-Antigen, Sugar Binding Protein
(Keyword Search:
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Reference
:
M. E. Carrizo, S. Capaldi, M. Perduca, F. J. Irazoqui, G. A. Nores, H. L. Monaco
The Antineoplastic Lectin Of The Common Edible Mushroom (Agaricus Bisporus) Has Two Binding Sites, Each Specific Fo A Different Configuration At A Single Epimeric Hydroxyl
J. Biol. Chem. V. 280 10614 2005
(for further references see the
PDB file header
)
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Hetero Components
(4, 14)
Info
All Hetero Components
1a: BETA-D-GALACTOSE (GALa)
1b: BETA-D-GALACTOSE (GALb)
2a: N-ACETYL-D-GLUCOSAMINE (NAGa)
3a: N-ACETYL-D-GALACTOSAMINE (NGAa)
3b: N-ACETYL-D-GALACTOSAMINE (NGAb)
4a: SERINE (SERa)
4b: SERINE (SERb)
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No.
Name
Count
Type
Full Name
1
GAL
4
Ligand/Ion
BETA-D-GALACTOSE
2
NAG
2
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
3
NGA
4
Ligand/Ion
N-ACETYL-D-GALACTOSAMINE
4
SER
4
Mod. Amino Acid
SERINE
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Sites
(7, 7)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
TYR A:28 , SER A:48 , GLY A:49 , HIS A:72 , ASN A:73 , ARG A:107 , GAL A:145 , SER A:146 , HOH A:169 , HOH A:188
BINDING SITE FOR RESIDUE NGA A 144
2
AC2
SOFTWARE
TYR A:28 , ALA A:29 , SER A:48 , NGA A:144 , HOH A:199 , HOH A:203
BINDING SITE FOR RESIDUE GAL A 145
3
AC3
SOFTWARE
TYR B:28 , SER B:48 , GLY B:49 , HIS B:72 , ASN B:73 , TYR B:74 , ARG B:107 , GAL B:145 , SER B:146 , HOH B:194
BINDING SITE FOR RESIDUE NGA B 144
4
AC4
SOFTWARE
TYR B:28 , ALA B:29 , SER B:48 , NGA B:144 , HOH B:192
BINDING SITE FOR RESIDUE GAL B 145
5
AC5
SOFTWARE
ASP A:79 , ILE A:80 , VAL A:81 , THR A:82 , ILE A:102 , ARG A:103 , TYR A:114 , VAL A:116 , HOH A:163 , HOH A:212
BINDING SITE FOR RESIDUE NAG A 147
6
AC6
SOFTWARE
HIS A:72 , ASN A:73 , NGA A:144 , HOH A:188
BINDING SITE FOR RESIDUE SER A 146
7
AC7
SOFTWARE
ASN B:73 , NGA B:144
BINDING SITE FOR RESIDUE SER B 146
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SAPs(SNPs)/Variants
(0, 0)
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1y2wa_ (A:)
1b: SCOP_d1y2wb_ (B:)
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Class
:
All beta proteins
(24004)
Fold
:
Cytolysin/lectin
(26)
Superfamily
:
Cytolysin/lectin
(26)
Family
:
Fungal fruit body lectin
(17)
Protein domain
:
TF antigen-binding lectin
(5)
Common mushroom (Agaricus bisporus) [TaxId: 5341]
(5)
1a
d1y2wa_
A:
1b
d1y2wb_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1y2wA00 (A:2-143)
1b: CATH_1y2wB00 (B:2-143)
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Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Mutm (Fpg) Protein; Chain: A, domain 2
(18)
Homologous Superfamily
:
[code=2.60.270.20, no name defined]
(18)
Agaricus bisporus. Organism_taxid: 5341
(5)
1a
1y2wA00
A:2-143
1b
1y2wB00
B:2-143
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Pfam Domains
(0, 0)
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Asym.Unit (55 KB)
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Header - Biol.Unit 1
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