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1Y1X
Biol. Unit 1
Info
Asym.Unit (68 KB)
Biol.Unit 1 (33 KB)
Biol.Unit 2 (32 KB)
Biol.Unit 3 (63 KB)
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(1)
Title
:
STRUCTURAL ANALYSIS OF A HOMOLOG OF PROGRAMMED CELL DEATH 6 PROTEIN FROM LEISHMANIA MAJOR FRIEDLIN
Authors
:
M. A. Robien, W. G. J. Hol, Structural Genomics Of Pathogenic Proto Consortium (Sgpp)
Date
:
19 Nov 04 (Deposition) - 07 Dec 04 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.95
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: A,B (1x)
Keywords
:
Sgpp, Structural Genomics, Psi, Protein Structure Initiative, Structural Genomics Of Pathogenic Protozoa Consortium, Unknown Function
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Reference
:
M. A. Robien, W. G. J. Hol, Structural Genomics Of Pathogenic Protozoa Consortium (Sgpp
Structural Analysis Of A Homolog Of Programmed Cell Death 6 Protein From Leishmania Major Friedlin
To Be Published
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
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No.
Name
Count
Type
Full Name
1
CA
-1
Ligand/Ion
CALCIUM ION
2
SO4
2
Ligand/Ion
SULFATE ION
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Sites
(4, 4)
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All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:37 , ASP A:39 , SER A:41 , ALA A:43 , GLU A:48 , HOH A:508
BINDING SITE FOR RESIDUE CA A 201
2
AC2
SOFTWARE
ASP A:73 , ASN A:75 , SER A:77 , GLU A:79 , GLU A:84 , HOH A:554
BINDING SITE FOR RESIDUE CA A 202
3
AC3
SOFTWARE
SER A:61 , LEU A:62 , ALA A:63
BINDING SITE FOR RESIDUE SO4 A 203
4
AC4
SOFTWARE
ARG A:34 , SER A:112 , ARG A:116 , GLN A:132 , ARG B:34
BINDING SITE FOR RESIDUE SO4 A 204
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SAPs(SNPs)/Variants
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1y1xa_ (A:)
1b: SCOP_d1y1xb_ (B:)
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Class
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All alpha proteins
(14657)
Fold
:
EF Hand-like
(739)
Superfamily
:
EF-hand
(657)
Family
:
Penta-EF-hand proteins
(30)
Protein domain
:
Programmed cell death 6 protein-like protein
(1)
Leishmania major [TaxId: 5664]
(1)
1a
d1y1xa_
A:
1b
d1y1xb_
B:
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CATH Domains
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Pfam Domains
(2, 6)
Info
all PFAM domains
1a: PFAM_EF_hand_4_1y1xB01 (B:66-93)
1b: PFAM_EF_hand_4_1y1xB02 (B:66-93)
2a: PFAM_EF_hand_5_1y1xB03 (B:92-155)
2b: PFAM_EF_hand_5_1y1xB04 (B:92-155)
2c: PFAM_EF_hand_5_1y1xB05 (B:92-155)
2d: PFAM_EF_hand_5_1y1xB06 (B:92-155)
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Clan
:
EF_hand
(270)
Family
:
EF_hand_4
(30)
Leishmania major
(1)
1a
EF_hand_4-1y1xB01
B:66-93
1b
EF_hand_4-1y1xB02
B:66-93
Family
:
EF_hand_5
(126)
Leishmania major
(1)
2a
EF_hand_5-1y1xB03
B:92-155
2b
EF_hand_5-1y1xB04
B:92-155
2c
EF_hand_5-1y1xB05
B:92-155
2d
EF_hand_5-1y1xB06
B:92-155
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Asym.Unit (68 KB)
Header - Asym.Unit
Biol.Unit 1 (33 KB)
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Biol.Unit 3 (63 KB)
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