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1Y1M
Biol. Unit 2
Info
Asym.Unit (103 KB)
Biol.Unit 1 (51 KB)
Biol.Unit 2 (50 KB)
Biol.Unit 3 (99 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE NR1 LIGAND BINDING CORE IN COMPLEX WITH CYCLOLEUCINE
Authors
:
A. Inanobe, E. Gouaux
Date
:
18 Nov 04 (Deposition) - 12 Jul 05 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: A,B (1x)
Keywords
:
Protein-Ligand Complex; Ligand-Binding Complex, Ligand Binding Protein
(Keyword Search:
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)
Reference
:
A. Inanobe, H. Furukawa, E. Gouaux
Mechanism Of Partial Agonist Action At The Nr1 Subunit Of Nmda Receptors.
Neuron V. 47 71 2005
(for further references see the
PDB file header
)
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: 1-AMINOCYCLOPENTANECARBOXYLIC ACID (AC5a)
1b: 1-AMINOCYCLOPENTANECARBOXYLIC ACID (AC5b)
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No.
Name
Count
Type
Full Name
1
AC5
1
Ligand/Ion
1-AMINOCYCLOPENTANECARBOXYLIC ACID
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Sites
(1, 1)
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All Sites
1: AC2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC2
SOFTWARE
PHE B:92 , PRO B:124 , LEU B:125 , THR B:126 , ARG B:131 , SER B:180 , TRP B:223 , ASP B:224 , PHE B:250 , HOH B:1011
BINDING SITE FOR RESIDUE AC5 B 1002
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SAPs(SNPs)/Variants
(0, 0)
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Exons
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1y1ma_ (A:)
1b: SCOP_d1y1mb_ (B:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Periplasmic binding protein-like II
(813)
Superfamily
:
Periplasmic binding protein-like II
(813)
Family
:
Phosphate binding protein-like
(463)
Protein domain
:
N-methyl-D-aspartate receptor subunit 1
(15)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(14)
1a
d1y1ma_
A:
1b
d1y1mb_
B:
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1y1mB01 (B:5-143,B:252-285)
1b: CATH_1y1mA01 (A:5-143,A:252-285)
1c: CATH_1y1mA02 (A:144-251)
1d: CATH_1y1mB02 (B:144-251)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
D-Maltodextrin-Binding Protein; domain 2
(600)
Homologous Superfamily
:
Periplasmic binding protein-like II
(486)
Norway rat (Rattus norvegicus)
(84)
1a
1y1mB01
B:5-143,B:252-285
1b
1y1mA01
A:5-143,A:252-285
1c
1y1mA02
A:144-251
1d
1y1mB02
B:144-251
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_Lig_chan_1y1mB01 (B:155-285)
1b: PFAM_Lig_chan_1y1mB02 (B:155-285)
2a: PFAM_SBP_bac_3_1y1mB03 (B:62-285)
2b: PFAM_SBP_bac_3_1y1mB04 (B:62-285)
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Clan
:
Ion_channel
(150)
Family
:
Lig_chan
(109)
Rattus norvegicus (Rat)
(101)
1a
Lig_chan-1y1mB01
B:155-285
1b
Lig_chan-1y1mB02
B:155-285
Clan
:
PBP
(391)
Family
:
SBP_bac_3
(32)
Rattus norvegicus (Rat)
(17)
2a
SBP_bac_3-1y1mB03
B:62-285
2b
SBP_bac_3-1y1mB04
B:62-285
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Show PDB file:
Asym.Unit (103 KB)
Header - Asym.Unit
Biol.Unit 1 (51 KB)
Header - Biol.Unit 1
Biol.Unit 2 (50 KB)
Header - Biol.Unit 2
Biol.Unit 3 (99 KB)
Header - Biol.Unit 3
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