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Getting 'Biological Unit' information from database.
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Getting 'Hetero Component' information from database.
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Getting 'Exon' information from database.
1Y1F
Asym. Unit
Info
Asym.Unit (60 KB)
Biol.Unit 1 (55 KB)
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(1)
Title
:
HUMAN FORMYLGLYCINE GENERATING ENZYME WITH CYSTEINE SULFENIC ACID
Authors
:
M. G. Rudolph, A. Dickmanns, R. Ficner
Date
:
18 Nov 04 (Deposition) - 31 May 05 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : X
Biol. Unit 1: X (1x)
Keywords
:
Formylglycine, Multiple Sulfatase Deficiency, Cysteine Sulfenic Acid, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Dierks, A. Dickmanns, A. Preusser-Kunze, B. Schmidt, M. Mariappan K. Von Figura, R. Ficner, M. G. Rudolph
Molecular Basis For Multiple Sulfatase Deficiency And Mechanism For Formylglycine Generation Of The Human Formylglycine-Generating Enzyme.
Cell(Cambridge, Mass. ) V. 121 541 2005
[
close entry info
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Hetero Components
(3, 5)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
2a: S-HYDROXYCYSTEINE (CSOa)
3a: N-ACETYL-D-GLUCOSAMINE (NAGa)
3b: N-ACETYL-D-GLUCOSAMINE (NAGb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
2
Ligand/Ion
CALCIUM ION
2
CSO
1
Mod. Amino Acid
S-HYDROXYCYSTEINE
3
NAG
2
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
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]
Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
NAG X:2 , THR X:134 , GLU X:137 , LYS X:138 , ASN X:141 , HOH X:1192 , HOH X:1397
BINDING SITE FOR RESIDUE NAG X 1
2
AC2
SOFTWARE
NAG X:1
BINDING SITE FOR RESIDUE NAG X 2
3
AC3
SOFTWARE
GLU X:130 , ASN X:293 , GLY X:296 , ALA X:298 , GLU X:300 , HOH X:1012
BINDING SITE FOR RESIDUE CA X 1001
4
AC4
SOFTWARE
ASN X:259 , ILE X:260 , ASP X:273 , PHE X:275 , HOH X:1006 , HOH X:1016
BINDING SITE FOR RESIDUE CA X 1002
[
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SAPs(SNPs)/Variants
(13, 13)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_016053 (S155P, chain X, )
02: VAR_019051 (A177P, chain X, )
03: VAR_042602 (W179S, chain X, )
04: VAR_016054 (C218Y, chain X, )
05: VAR_019052 (R224W, chain X, )
06: VAR_019053 (N259I, chain X, )
07: VAR_019054 (P266L, chain X, )
08: VAR_016055 (A279V, chain X, )
09: VAR_016056 (C336R, chain X, )
10: VAR_016057 (R345C, chain X, )
11: VAR_016058 (A348P, chain X, )
12: VAR_016059 (R349Q, chain X, )
13: VAR_016060 (R349W, chain X, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_016053
S
155
P
SUMF1_HUMAN
Disease (MSD)
---
X
S
155
P
02
UniProt
VAR_019051
A
177
P
SUMF1_HUMAN
Disease (MSD)
---
X
A
177
P
03
UniProt
VAR_042602
W
179
S
SUMF1_HUMAN
Disease (MSD)
---
X
W
179
S
04
UniProt
VAR_016054
C
218
Y
SUMF1_HUMAN
Disease (MSD)
---
X
C
218
Y
05
UniProt
VAR_019052
R
224
W
SUMF1_HUMAN
Disease (MSD)
---
X
R
224
W
06
UniProt
VAR_019053
N
259
I
SUMF1_HUMAN
Disease (MSD)
---
X
N
259
I
07
UniProt
VAR_019054
P
266
L
SUMF1_HUMAN
Disease (MSD)
---
X
P
266
L
08
UniProt
VAR_016055
A
279
V
SUMF1_HUMAN
Disease (MSD)
---
X
A
279
V
09
UniProt
VAR_016056
C
336
R
SUMF1_HUMAN
Disease (MSD)
---
X
C
336
R
10
UniProt
VAR_016057
R
345
C
SUMF1_HUMAN
Disease (MSD)
---
X
R
345
C
11
UniProt
VAR_016058
A
348
P
SUMF1_HUMAN
Disease (MSD)
---
X
A
348
P
12
UniProt
VAR_016059
R
349
Q
SUMF1_HUMAN
Disease (MSD)
---
X
R
349
Q
13
UniProt
VAR_016060
R
349
W
SUMF1_HUMAN
Disease (MSD)
---
X
R
349
W
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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Label:
End label:
Sorry, no Info available
[
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Exons
(9, 9)
Info
All Exons
Exon 1.1a (X:86-90)
Exon 1.2 (X:91-148)
Exon 1.3 (X:149-162)
Exon 1.4 (X:177-201)
Exon 1.5 (X:201-242)
Exon 1.6 (X:242-280)
Exon 1.7 (X:281-318)
Exon 1.8 (X:319-338)
Exon 1.9d (X:339-371)
View:
Select:
Label:
All Exon Boundaries
01: Boundary -/1.1a
02: Boundary 1.1a/1.2
03: Boundary 1.2/1.3
04: Boundary 1.3/1.4
05: Boundary 1.4/1.5
06: Boundary 1.5/1.6
07: Boundary 1.6/1.7
08: Boundary 1.7/1.8
09: Boundary 1.8/1.9d
10: Boundary 1.9d/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000272902
1a
ENSE00001901311
chr3:
4508965-4508660
306
SUMF1_HUMAN
1-90
90
1
X:86-90
5
1.2
ENST00000272902
2
ENSE00000965223
chr3:
4494733-4494560
174
SUMF1_HUMAN
91-148
58
1
X:91-148
58
1.3
ENST00000272902
3
ENSE00001173781
chr3:
4491024-4490950
75
SUMF1_HUMAN
149-173
25
1
X:149-162
14
1.4
ENST00000272902
4
ENSE00001173775
chr3:
4461830-4461748
83
SUMF1_HUMAN
174-201
28
1
X:177-201
25
1.5
ENST00000272902
5
ENSE00001173770
chr3:
4459816-4459694
123
SUMF1_HUMAN
201-242
42
1
X:201-242
42
1.6
ENST00000272902
6
ENSE00001173766
chr3:
4458926-4458812
115
SUMF1_HUMAN
242-280
39
1
X:242-280
39
1.7
ENST00000272902
7
ENSE00001173758
chr3:
4452662-4452549
114
SUMF1_HUMAN
281-318
38
1
X:281-318
38
1.8
ENST00000272902
8
ENSE00001173755
chr3:
4418073-4418014
60
SUMF1_HUMAN
319-338
20
1
X:319-338
20
1.9d
ENST00000272902
9d
ENSE00001072608
chr3:
4403938-4402830
1109
SUMF1_HUMAN
339-374
36
1
X:339-371
33
[
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]
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1y1fx_ (X:)
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
C-type lectin-like
(322)
Superfamily
:
C-type lectin-like
(322)
Family
:
Sulfatase-modifying factor-like
(15)
Protein domain
:
automated matches
(11)
Human (Homo sapiens) [TaxId: 9606]
(11)
1a
d1y1fx_
X:
[
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]
CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1y1fX00 (X:86-371)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
paralog of FGE (formylglycine-generating enzyme)
(16)
Homologous Superfamily
:
paralog of FGE (formylglycine-generating enzyme)
(16)
Human (Homo sapiens)
(15)
1a
1y1fX00
X:86-371
[
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_FGE_sulfatase_1y1fX01 (X:87-367)
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Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: FGE-sulfatase]
(9)
Family
:
FGE-sulfatase
(9)
Homo sapiens (Human)
(8)
1a
FGE-sulfatase-1y1fX01
X:87-367
[
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]
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Asymmetric Unit 1
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