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1Y18
Biol. Unit 1
Info
Asym.Unit (284 KB)
Biol.Unit 1 (75 KB)
Biol.Unit 2 (74 KB)
Biol.Unit 3 (74 KB)
Biol.Unit 4 (75 KB)
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(1)
Title
:
FAB FRAGMENT OF CATALYTIC ELIMINATION ANTIBODY 34E4 E(H50)D MUTANT IN COMPLEX WITH HAPTEN
Authors
:
E. W. Debler, S. Ito, A. Heine, I. A. Wilson
Date
:
17 Nov 04 (Deposition) - 05 Apr 05 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B,C,D,E,F,H,L
Biol. Unit 1: H,L (1x)
Biol. Unit 2: A,B (1x)
Biol. Unit 3: C,D (1x)
Biol. Unit 4: E,F (1x)
Keywords
:
Immunoglobulin, Catalytic Antibody, Chimeric Fab, Hapten Complex, Immune System
(Keyword Search:
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Reference
:
E. W. Debler, S. Ito, F. P. Seebeck, A. Heine, D. Hilvert, I. A. Wilson
Structural Origins Of Efficient Proton Abstraction From Carbon By A Catalytic Antibody
Proc. Natl. Acad. Sci. Usa V. 102 4984 2005
(for further references see the
PDB file header
)
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
2a: 2-AMINO-5,6-DIMETHYL-BENZIMIDAZOLE... (HANa)
2b: 2-AMINO-5,6-DIMETHYL-BENZIMIDAZOLE... (HANb)
2c: 2-AMINO-5,6-DIMETHYL-BENZIMIDAZOLE... (HANc)
2d: 2-AMINO-5,6-DIMETHYL-BENZIMIDAZOLE... (HANd)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CL
-1
Ligand/Ion
CHLORIDE ION
2
HAN
1
Ligand/Ion
2-AMINO-5,6-DIMETHYL-BENZIMIDAZOLE-1-PENTANOIC ACID
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Sites
(1, 1)
Info
All Sites
1: AC2 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC2
SOFTWARE
TYR B:100 , ASP H:50 , ASN H:58 , VAL H:99 , HIS H:100B , TYR H:100D , TYR L:32 , TRP L:91 , LEU L:96 , HOH L:215
BINDING SITE FOR RESIDUE HAN H 501
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(, 0)
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(4, 16)
Info
All SCOP Domains
1a: SCOP_d1y18b2 (B:114-233)
1b: SCOP_d1y18d2 (D:114-233)
1c: SCOP_d1y18f2 (F:114-233)
1d: SCOP_d1y18h2 (H:114-233)
2a: SCOP_d1y18a2 (A:108-212)
2b: SCOP_d1y18c2 (C:108-212)
2c: SCOP_d1y18e2 (E:108-212)
2d: SCOP_d1y18l2 (L:108-212)
3a: SCOP_d1y18b1 (B:1-113)
3b: SCOP_d1y18d1 (D:1-113)
3c: SCOP_d1y18f1 (F:1-113)
3d: SCOP_d1y18h1 (H:1-113)
4a: SCOP_d1y18a1 (A:1-107)
4b: SCOP_d1y18c1 (C:1-107)
4c: SCOP_d1y18e1 (E:1-107)
4d: SCOP_d1y18l1 (L:1-107)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
C1 set domains (antibody constant domain-like)
(3013)
Protein domain
:
Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
(608)
Human (Homo sapiens) [TaxId: 9606]
(179)
1a
d1y18b2
B:114-233
1b
d1y18d2
D:114-233
1c
d1y18f2
F:114-233
1d
d1y18h2
H:114-233
Protein domain
:
Immunoglobulin light chain kappa constant domain, CL-kappa
(495)
Human (Homo sapiens) [TaxId: 9606]
(144)
2a
d1y18a2
A:108-212
2b
d1y18c2
C:108-212
2c
d1y18e2
E:108-212
2d
d1y18l2
L:108-212
Family
:
V set domains (antibody variable domain-like)
(1919)
Protein domain
:
Immunoglobulin heavy chain variable domain, VH
(658)
Human (Homo sapiens), cluster 3 [TaxId: 9606]
(33)
3a
d1y18b1
B:1-113
3b
d1y18d1
D:1-113
3c
d1y18f1
F:1-113
3d
d1y18h1
H:1-113
Protein domain
:
Immunoglobulin light chain kappa variable domain, VL-kappa
(616)
Human (Homo sapiens), cluster 3.2 [TaxId: 9606]
(31)
4a
d1y18a1
A:1-107
4b
d1y18c1
C:1-107
4c
d1y18e1
E:1-107
4d
d1y18l1
L:1-107
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CATH Domains
(1, 16)
Info
all CATH domains
1a: CATH_1y18A02 (A:109-214)
1b: CATH_1y18A01 (A:1-108)
1c: CATH_1y18C01 (C:1-108)
1d: CATH_1y18E01 (E:1-108)
1e: CATH_1y18L01 (L:1-108)
1f: CATH_1y18B01 (B:1-113)
1g: CATH_1y18D01 (D:1-113)
1h: CATH_1y18F01 (F:1-113)
1i: CATH_1y18H01 (H:1-113)
1j: CATH_1y18C02 (C:109-214)
1k: CATH_1y18E02 (E:109-214)
1l: CATH_1y18L02 (L:109-214)
1m: CATH_1y18B02 (B:114-233)
1n: CATH_1y18D02 (D:114-233)
1o: CATH_1y18F02 (F:114-233)
1p: CATH_1y18H02 (H:114-233)
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Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
House mouse, human (Mus musculus, homo sapiens)
(20)
1a
1y18A02
A:109-214
1b
1y18A01
A:1-108
1c
1y18C01
C:1-108
1d
1y18E01
E:1-108
1e
1y18L01
L:1-108
1f
1y18B01
B:1-113
1g
1y18D01
D:1-113
1h
1y18F01
F:1-113
1i
1y18H01
H:1-113
1j
1y18C02
C:109-214
1k
1y18E02
E:109-214
1l
1y18L02
L:109-214
1m
1y18B02
B:114-233
1n
1y18D02
D:114-233
1o
1y18F02
F:114-233
1p
1y18H02
H:114-233
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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Asym.Unit (284 KB)
Header - Asym.Unit
Biol.Unit 1 (75 KB)
Header - Biol.Unit 1
Biol.Unit 2 (74 KB)
Header - Biol.Unit 2
Biol.Unit 3 (74 KB)
Header - Biol.Unit 3
Biol.Unit 4 (75 KB)
Header - Biol.Unit 4
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