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1Y0G
Biol. Unit 1
Info
Asym.Unit (123 KB)
Biol.Unit 1 (60 KB)
Biol.Unit 2 (60 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE ESCHERICHIA COLI YCEI PROTEIN, STRUCTURAL GENOMICS
Authors
:
Y. V. Patskovsky, B. Strokopytov, U. Ramagopal, S. C. Almo, S. K. Burley, New York Sgx Research Center For Structural Genomics (Nysgxrc)
Date
:
15 Nov 04 (Deposition) - 21 Dec 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Lipid Binding Protein, Lipocalin, Cofactor, Coenzyme, Dehydrogenase, Hydrolase, Predicted, Structural Genomics, Protein Structure Initiative, Psi, Nysgxrc, New York Sgx Research Center For Structural Genomics
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. V. Patskovsky, B. Strokopytov, U. Ramagopal, S. C. Almo
Crystal Structure Of The Escherichia Coli Ycei Periplasmic Protein
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: 2-[(2E,6E,10E,14E,18E,22E,26E)-3,7... (8PPa)
1b: 2-[(2E,6E,10E,14E,18E,22E,26E)-3,7... (8PPb)
1c: 2-[(2E,6E,10E,14E,18E,22E,26E)-3,7... (8PPc)
1d: 2-[(2E,6E,10E,14E,18E,22E,26E)-3,7... (8PPd)
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No.
Name
Count
Type
Full Name
1
8PP
2
Ligand/Ion
2-[(2E,6E,10E,14E,18E,22E,26E)-3,7,11,15,19,23,27,31-OCTAMETHYLDOTRIACONTA-2,6,10,14,18,22,26,30-OCTAENYL]PHENOL
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
VAL A:36 , ILE A:40 , GLN A:41 , HIS A:42 , LEU A:48 , PHE A:52 , THR A:60 , LYS A:70 , VAL A:71 , VAL A:73 , ILE A:75 , ARG A:87 , PHE A:96 , ALA A:105 , PHE A:155 , ILE A:161 , LEU A:163 , LEU A:172 , ILE A:183 , VAL A:185 , HIS B:33
BINDING SITE FOR RESIDUE 8PP A 320
2
AC2
SOFTWARE
HIS A:33 , VAL B:36 , PHE B:38 , ILE B:40 , GLN B:41 , HIS B:42 , LEU B:48 , PHE B:52 , THR B:60 , PHE B:61 , LYS B:70 , VAL B:71 , VAL B:73 , ILE B:75 , ARG B:87 , LEU B:91 , ALA B:105 , PHE B:107 , PHE B:155 , ILE B:161 , LEU B:163 , ILE B:183 , VAL B:185 , GLY C:149
BINDING SITE FOR RESIDUE 8PP B 321
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1y0ga_ (A:)
1b: SCOP_d1y0gb_ (B:)
1c: SCOP_d1y0gc_ (C:)
1d: SCOP_d1y0gd_ (D:)
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Class
:
All beta proteins
(24004)
Fold
:
Streptavidin-like
(225)
Superfamily
:
YceI-like
(3)
Family
:
YceI-like
(2)
Protein domain
:
Lipid binding protein YceI
(1)
Escherichia coli [TaxId: 562]
(1)
1a
d1y0ga_
A:
1b
d1y0gb_
B:
1c
d1y0gc_
C:
1d
d1y0gd_
D:
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1y0gA00 (A:23-191)
1b: CATH_1y0gB00 (B:23-191)
1c: CATH_1y0gC00 (C:23-191)
1d: CATH_1y0gD00 (D:23-191)
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Organisms
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(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Lipocalin
(526)
Homologous Superfamily
:
Protein ycei
(2)
Escherichia coli. Organism_taxid: 562.
(1)
1a
1y0gA00
A:23-191
1b
1y0gB00
B:23-191
1c
1y0gC00
C:23-191
1d
1y0gD00
D:23-191
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_YceI_1y0gD01 (D:24-188)
1b: PFAM_YceI_1y0gD02 (D:24-188)
1c: PFAM_YceI_1y0gD03 (D:24-188)
1d: PFAM_YceI_1y0gD04 (D:24-188)
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Clan
:
no clan defined [family: YceI]
(5)
Family
:
YceI
(5)
Escherichia coli (strain K12)
(1)
1a
YceI-1y0gD01
D:24-188
1b
YceI-1y0gD02
D:24-188
1c
YceI-1y0gD03
D:24-188
1d
YceI-1y0gD04
D:24-188
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Asymmetric Unit 1
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Asym.Unit (123 KB)
Header - Asym.Unit
Biol.Unit 1 (60 KB)
Header - Biol.Unit 1
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