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1Y0B
Biol. Unit 2
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Asym.Unit (146 KB)
Biol.Unit 1 (71 KB)
Biol.Unit 2 (71 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF XANTHINE PHOSPHORIBOSYLTRANSFERASE FROM BACILLUS SUBTILIS.
Authors
:
M. E. Cuff, R. Wu, A. Joachimiak, Midwest Center For Structural Gen (Mcsg)
Date
:
15 Nov 04 (Deposition) - 22 Feb 05 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Xanthine, Purine Metabolism, Phosphoribosyltransferase, Structural Genomics, Psi, Protein Structure Initative, Midwest Center For Structural Genomics, Mcsg, Protein Structure Initiative, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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Reference
:
M. E. Cuff, R. Wu, A. Joachimiak, Mcsg
Crystal Structure Of Xanthine Phosphoribosyltransferase Fro Bacillus Subtilis
To Be Published
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Hetero Components
(2, 8)
Info
All Hetero Components
1a: GUANOSINE-5',3'-TETRAPHOSPHATE (G4Pa)
1b: GUANOSINE-5',3'-TETRAPHOSPHATE (G4Pb)
1c: GUANOSINE-5',3'-TETRAPHOSPHATE (G4Pc)
1d: GUANOSINE-5',3'-TETRAPHOSPHATE (G4Pd)
2a: SELENOMETHIONINE (MSEa)
2b: SELENOMETHIONINE (MSEb)
2c: SELENOMETHIONINE (MSEc)
2d: SELENOMETHIONINE (MSEd)
2e: SELENOMETHIONINE (MSEe)
2f: SELENOMETHIONINE (MSEf)
2g: SELENOMETHIONINE (MSEg)
2h: SELENOMETHIONINE (MSEh)
2i: SELENOMETHIONINE (MSEi)
2j: SELENOMETHIONINE (MSEj)
2k: SELENOMETHIONINE (MSEk)
2l: SELENOMETHIONINE (MSEl)
3a: SODIUM ION (NAa)
3b: SODIUM ION (NAb)
3c: SODIUM ION (NAc)
3d: SODIUM ION (NAd)
3e: SODIUM ION (NAe)
3f: SODIUM ION (NAf)
3g: SODIUM ION (NAg)
3h: SODIUM ION (NAh)
View:
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Label:
No.
Name
Count
Type
Full Name
1
G4P
2
Ligand/Ion
GUANOSINE-5',3'-TETRAPHOSPHATE
2
MSE
6
Mod. Amino Acid
SELENOMETHIONINE
3
NA
-1
Ligand/Ion
SODIUM ION
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Sites
(6, 6)
Info
All Sites
1: AC5 (SOFTWARE)
2: AC6 (SOFTWARE)
3: AC7 (SOFTWARE)
4: AC8 (SOFTWARE)
5: BC2 (SOFTWARE)
6: BC3 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC5
SOFTWARE
ASP C:125 , NA C:887 , G4P C:888 , HOH C:913
BINDING SITE FOR RESIDUE NA C 886
2
AC6
SOFTWARE
ASP C:124 , ASP C:125 , NA C:886 , G4P C:888 , HOH C:890 , HOH C:895
BINDING SITE FOR RESIDUE NA C 887
3
AC7
SOFTWARE
ASP D:125 , NA D:887 , G4P D:888 , HOH D:943
BINDING SITE FOR RESIDUE NA D 886
4
AC8
SOFTWARE
ASP D:124 , ASP D:125 , NA D:886 , G4P D:888 , HOH D:896 , HOH D:902
BINDING SITE FOR RESIDUE NA D 887
5
BC2
SOFTWARE
VAL C:19 , LEU C:20 , ASN C:27 , GLU C:58 , SER C:59 , SER C:60 , LYS C:81 , ASP C:125 , PHE C:126 , LYS C:156 , NA C:886 , NA C:887 , HOH C:889 , HOH C:890 , HOH C:891 , HOH C:900 , HOH C:913 , HOH C:923 , HOH C:963 , HOH C:969 , HOH C:1032 , ARG D:80 , LEU D:85
BINDING SITE FOR RESIDUE G4P C 888
6
BC3
SOFTWARE
ARG C:80 , LEU C:85 , THR C:86 , HOH C:960 , GLN D:18 , VAL D:19 , LEU D:20 , ASN D:27 , GLU D:58 , SER D:59 , SER D:60 , LYS D:81 , ASP D:125 , PHE D:126 , LYS D:156 , NA D:886 , NA D:887 , HOH D:890 , HOH D:891 , HOH D:896 , HOH D:903 , HOH D:916 , HOH D:943 , HOH D:961 , HOH D:980 , HOH D:997 , HOH D:1047 , HOH D:1095
BINDING SITE FOR RESIDUE G4P D 888
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1y0ba1 (A:1-191)
1b: SCOP_d1y0bb_ (B:)
1c: SCOP_d1y0bc_ (C:)
1d: SCOP_d1y0bd_ (D:)
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
PRTase-like
(145)
Superfamily
:
PRTase-like
(145)
Family
:
Phosphoribosyltransferases (PRTases)
(100)
Protein domain
:
Xanthine phosphoribosyltransferase
(2)
Bacillus subtilis [TaxId: 1423]
(2)
1a
d1y0ba1
A:1-191
1b
d1y0bb_
B:
1c
d1y0bc_
C:
1d
d1y0bd_
D:
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1y0bC00 (C:-2-189)
1b: CATH_1y0bA00 (A:-1-191)
1c: CATH_1y0bD00 (D:-2-191)
1d: CATH_1y0bB01 (B:3-188)
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Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.2020, no name defined]
(117)
Bacillus subtilis. Organism_taxid: 1423.
(8)
1a
1y0bC00
C:-2-189
1b
1y0bA00
A:-1-191
1c
1y0bD00
D:-2-191
1d
1y0bB01
B:3-188
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_Pribosyltran_1y0bD01 (D:26-154)
1b: PFAM_Pribosyltran_1y0bD02 (D:26-154)
1c: PFAM_Pribosyltran_1y0bD03 (D:26-154)
1d: PFAM_Pribosyltran_1y0bD04 (D:26-154)
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Clan
:
PRTase-like
(59)
Family
:
Pribosyltran
(59)
Bacillus subtilis
(2)
1a
Pribosyltran-1y0bD01
D:26-154
1b
Pribosyltran-1y0bD02
D:26-154
1c
Pribosyltran-1y0bD03
D:26-154
1d
Pribosyltran-1y0bD04
D:26-154
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (146 KB)
Header - Asym.Unit
Biol.Unit 1 (71 KB)
Header - Biol.Unit 1
Biol.Unit 2 (71 KB)
Header - Biol.Unit 2
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