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1Y02
Asym. Unit
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Asym.Unit (23 KB)
Biol.Unit 1 (19 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A FYVE-TYPE DOMAIN FROM CASPASE REGULATOR CARP2
Authors
:
M. D. Tibbetts, L. Gu, E. N. Shiozaki, Y. Shi
Date
:
14 Nov 04 (Deposition) - 28 Dec 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Carp2, Fyve, Zinc-Binding Module, Phosphoinositide Binding, Caspase Regulation, Metal Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. D. Tibbetts, E. N. Shiozaki, L. Gu, E. R. Mcdonald, W. S. El-Deiry, Y. Shi
Crystal Structure Of A Fyve-Type Zinc Finger Domain From The Caspase Regulator Carp2.
Structure V. 12 2257 2004
(for further references see the
PDB file header
)
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: ZINC ION (ZNa)
1b: ZINC ION (ZNb)
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Label:
No.
Name
Count
Type
Full Name
1
ZN
2
Ligand/Ion
ZINC ION
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS A:38 , CYS A:41 , CYS A:60 , CYS A:63
BINDING SITE FOR RESIDUE ZN A 161
2
AC2
SOFTWARE
CYS A:22 , LYS A:23 , CYS A:25 , CYS A:46 , CYS A:49
BINDING SITE FOR RESIDUE ZN A 162
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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;
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Exons
(2, 2)
Info
All Exons
Exon 1.6b (A:20-35)
Exon 1.7c (A:36-114 (gaps))
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1: Boundary 1.3b/1.6b
2: Boundary 1.6b/1.7c
3: Boundary 1.7c/1.8
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.3b
ENST00000394597
3b
ENSE00001518959
chr17:
33390759-33390595
165
RFFL_HUMAN
-
0
0
-
-
1.6b
ENST00000394597
6b
ENSE00001377801
chr17:
33353580-33353393
188
RFFL_HUMAN
1-60
60
1
A:20-35
16
1.7c
ENST00000394597
7c
ENSE00001160691
chr17:
33348800-33348390
411
RFFL_HUMAN
61-197
137
1
A:36-114 (gaps)
79
1.8
ENST00000394597
8
ENSE00001106076
chr17:
33344625-33344542
84
RFFL_HUMAN
198-225
28
0
-
-
1.9b
ENST00000394597
9b
ENSE00000946826
chr17:
33343599-33343389
211
RFFL_HUMAN
226-296
71
0
-
-
1.10
ENST00000394597
10
ENSE00001106079
chr17:
33341782-33341759
24
RFFL_HUMAN
296-304
9
0
-
-
1.11a
ENST00000394597
11a
ENSE00001253861
chr17:
33339168-33336131
3038
RFFL_HUMAN
304-363
60
0
-
-
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SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d1y02a1 (A:71-114)
2a: SCOP_d1y02a2 (A:20-70)
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(
)
(
)
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)
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)
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)
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)
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)
(
)
Protein Domains
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)
(
)
Organisms
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)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
LEM/SAP HeH motif
(33)
Superfamily
:
SAP domain
(9)
Family
:
SAP domain
(9)
Protein domain
:
Rififylin (FYVE-RING finger protein Sakura)
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d1y02a1
A:71-114
Class
:
Small proteins
(3458)
Fold
:
FYVE/PHD zinc finger
(57)
Superfamily
:
FYVE/PHD zinc finger
(57)
Family
:
FYVE, a phosphatidylinositol-3-phosphate binding domain
(8)
Protein domain
:
Rififylin (FYVE-RING finger protein Sakura)
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
2a
d1y02a2
A:20-70
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CATH Domains
(0, 0)
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Pfam Domains
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Chain A
Asymmetric Unit 1
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Asym.Unit (23 KB)
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