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Asym. Unit
Info
Asym.Unit (157 KB)
Biol.Unit 1 (150 KB)
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(1)
Title
:
SWEET POTATO PURPLE ACID PHOSPHATASE/PHOSPHATE COMPLEX
Authors
:
G. Schenk, L. E. Carrington, L. R. Gahan, S. E. Hamilton, J. De Jersey, L
Date
:
12 Nov 04 (Deposition) - 14 Dec 04 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. Schenk, L. R. Gahan, L. E. Carrington, N. Mitic, M. Valizadeh, S. E. Hamilton, J. De Jersey, L. W. Guddat
Phosphate Forms An Unusual Tripodal Complex With The Fe-Mn Center Of Sweet Potato Purple Acid Phosphatase
Proc. Natl. Acad. Sci. Usa V. 102 273 2005
[
close entry info
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Hetero Components
(6, 29)
Info
All Hetero Components
1a: FE (III) ION (FEa)
1b: FE (III) ION (FEb)
2a: ALPHA-L-FUCOSE (FUCa)
2b: ALPHA-L-FUCOSE (FUCb)
2c: ALPHA-L-FUCOSE (FUCc)
2d: ALPHA-L-FUCOSE (FUCd)
2e: ALPHA-L-FUCOSE (FUCe)
2f: ALPHA-L-FUCOSE (FUCf)
3a: ALPHA-D-MANNOSE (MANa)
3b: ALPHA-D-MANNOSE (MANb)
4a: MANGANESE (II) ION (MNa)
4b: MANGANESE (II) ION (MNb)
5a: N-ACETYL-D-GLUCOSAMINE (NAGa)
5b: N-ACETYL-D-GLUCOSAMINE (NAGb)
5c: N-ACETYL-D-GLUCOSAMINE (NAGc)
5d: N-ACETYL-D-GLUCOSAMINE (NAGd)
5e: N-ACETYL-D-GLUCOSAMINE (NAGe)
5f: N-ACETYL-D-GLUCOSAMINE (NAGf)
5g: N-ACETYL-D-GLUCOSAMINE (NAGg)
5h: N-ACETYL-D-GLUCOSAMINE (NAGh)
5i: N-ACETYL-D-GLUCOSAMINE (NAGi)
5j: N-ACETYL-D-GLUCOSAMINE (NAGj)
5k: N-ACETYL-D-GLUCOSAMINE (NAGk)
5l: N-ACETYL-D-GLUCOSAMINE (NAGl)
5m: N-ACETYL-D-GLUCOSAMINE (NAGm)
6a: PHOSPHATE ION (PO4a)
6b: PHOSPHATE ION (PO4b)
6c: PHOSPHATE ION (PO4c)
6d: PHOSPHATE ION (PO4d)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
FE
2
Ligand/Ion
FE (III) ION
2
FUC
6
Ligand/Ion
ALPHA-L-FUCOSE
3
MAN
2
Ligand/Ion
ALPHA-D-MANNOSE
4
MN
2
Ligand/Ion
MANGANESE (II) ION
5
NAG
13
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
6
PO4
4
Ligand/Ion
PHOSPHATE ION
[
close Hetero Component info
]
Sites
(29, 29)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:80 , NAG A:436 , FUC A:438
BINDING SITE FOR RESIDUE NAG A 433
02
AC2
SOFTWARE
NAG A:433 , FUC A:438 , MAN A:439
BINDING SITE FOR RESIDUE NAG A 436
03
AC3
SOFTWARE
NAG A:433 , NAG A:436
BINDING SITE FOR RESIDUE FUC A 438
04
AC4
SOFTWARE
ASP A:12 , NAG A:436
BINDING SITE FOR RESIDUE MAN A 439
05
AC5
SOFTWARE
ASP A:14 , ASN A:142 , THR A:146 , NAG A:442
BINDING SITE FOR RESIDUE NAG A 434
06
AC6
SOFTWARE
ASP A:14 , NAG A:434
BINDING SITE FOR RESIDUE NAG A 442
07
AC7
SOFTWARE
LYS A:394 , ASN A:395 , HIS A:398 , FUC A:440
BINDING SITE FOR RESIDUE NAG A 435
08
AC8
SOFTWARE
NAG A:435
BINDING SITE FOR RESIDUE FUC A 440
09
AC9
SOFTWARE
ASN A:273 , FUC A:443
BINDING SITE FOR RESIDUE NAG A 437
10
BC1
SOFTWARE
NAG A:437
BINDING SITE FOR RESIDUE FUC A 443
11
BC2
SOFTWARE
TYR B:579 , ASN B:580 , ASN B:672 , NAG B:936 , FUC B:942
BINDING SITE FOR RESIDUE NAG B 933
12
BC3
SOFTWARE
ASN B:672 , NAG B:933 , FUC B:942 , HOH B:1147
BINDING SITE FOR RESIDUE NAG B 936
13
BC4
SOFTWARE
NAG B:933 , NAG B:936 , HOH B:1129
BINDING SITE FOR RESIDUE FUC B 942
14
BC5
SOFTWARE
ASP B:514 , HIS B:639 , ASN B:642 , THR B:646
BINDING SITE FOR RESIDUE NAG B 934
15
BC6
SOFTWARE
LYS B:894 , ASN B:895 , HIS B:898 , FUC B:938 , NAG B:939 , HOH B:1032
BINDING SITE FOR RESIDUE NAG B 935
16
BC7
SOFTWARE
VAL B:518 , PRO B:519 , NAG B:935 , NAG B:939 , HOH B:1032 , HOH B:1045 , HOH B:1097
BINDING SITE FOR RESIDUE FUC B 938
17
BC8
SOFTWARE
HIS B:898 , NAG B:935 , FUC B:938 , MAN B:941 , HOH B:1032
BINDING SITE FOR RESIDUE NAG B 939
18
BC9
SOFTWARE
NAG B:939
BINDING SITE FOR RESIDUE MAN B 941
19
CC1
SOFTWARE
ASN B:773 , GLU B:776 , NAG B:940 , FUC B:945
BINDING SITE FOR RESIDUE NAG B 937
20
CC2
SOFTWARE
NAG B:937 , FUC B:945
BINDING SITE FOR RESIDUE NAG B 940
21
CC3
SOFTWARE
HOH A:1135 , NAG B:937 , NAG B:940
BINDING SITE FOR RESIDUE FUC B 945
22
CC4
SOFTWARE
ASP A:134 , ASP A:163 , TYR A:166 , HIS A:324 , MN A:430 , PO4 A:431
BINDING SITE FOR RESIDUE FE A 429
23
CC5
SOFTWARE
ASP A:163 , ASN A:200 , HIS A:285 , HIS A:322 , FE A:429 , PO4 A:431
BINDING SITE FOR RESIDUE MN A 430
24
CC6
SOFTWARE
ASP A:134 , ASP A:163 , TYR A:166 , ASN A:200 , HIS A:201 , HIS A:295 , HIS A:322 , HIS A:324 , GLU A:365 , FE A:429 , MN A:430
BINDING SITE FOR RESIDUE PO4 A 431
25
CC7
SOFTWARE
ASP B:634 , ASP B:663 , TYR B:666 , HIS B:824 , MN B:930 , PO4 B:931
BINDING SITE FOR RESIDUE FE B 929
26
CC8
SOFTWARE
ASP B:663 , ASN B:700 , HIS B:785 , HIS B:822 , FE B:929 , PO4 B:931
BINDING SITE FOR RESIDUE MN B 930
27
CC9
SOFTWARE
ASP B:663 , TYR B:666 , ASN B:700 , HIS B:701 , HIS B:795 , HIS B:822 , HIS B:824 , GLU B:865 , FE B:929 , MN B:930
BINDING SITE FOR RESIDUE PO4 B 931
28
DC1
SOFTWARE
ARG B:831 , TRP B:918 , LEU B:920 , ARG B:922
BINDING SITE FOR RESIDUE PO4 B 450
29
DC2
SOFTWARE
ARG A:331 , TRP A:418 , LEU A:419 , LEU A:420 , ARG A:422
BINDING SITE FOR RESIDUE PO4 A 451
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
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]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1xzwa1 (A:1-119)
1b: SCOP_d1xzwb3 (B:501-619)
2a: SCOP_d1xzwa2 (A:120-424)
2b: SCOP_d1xzwb2 (B:620-926)
View:
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Classes
(
)
(
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Folds
(
)
(
)
Superfamilies
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)
(
)
Families
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Purple acid phosphatase, N-terminal domain
(9)
Family
:
Purple acid phosphatase, N-terminal domain
(4)
Protein domain
:
Purple acid phosphatase, N-terminal domain
(4)
Sweet potato (Ipomoea batatas) [TaxId: 4120]
(1)
1a
d1xzwa1
A:1-119
1b
d1xzwb3
B:501-619
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Metallo-dependent phosphatases
(115)
Superfamily
:
Metallo-dependent phosphatases
(115)
Family
:
Purple acid phosphatase-like
(14)
Protein domain
:
Plant purple acid phosphatase, catalytic domain
(4)
Sweet potato (Ipomoea batatas) [TaxId: 4120]
(1)
2a
d1xzwa2
A:120-424
2b
d1xzwb2
B:620-926
[
close SCOP info
]
CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1xzwA02 (A:122-424)
1b: CATH_1xzwB02 (B:622-926)
2a: CATH_1xzwA01 (A:24-121)
2b: CATH_1xzwB01 (B:524-621)
View:
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Classes
(
)
(
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Architectures
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)
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)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
4-Layer Sandwich
(459)
Topology
:
Purple Acid Phosphatase; chain A, domain 2
(87)
Homologous Superfamily
:
[code=3.60.21.10, no name defined]
(83)
Sweet potato (Ipomoea batatas)
(1)
1a
1xzwA02
A:122-424
1b
1xzwB02
B:622-926
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Purple acid phosphatase, domain1
(6)
Sweet potato (Ipomoea batatas)
(1)
2a
1xzwA01
A:24-121
2b
1xzwB01
B:524-621
[
close CATH info
]
Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_Metallophos_1xzwB01 (B:627-826)
1b: PFAM_Metallophos_1xzwB02 (B:627-826)
2a: PFAM_Metallophos_C_1xzwB03 (B:851-917)
2b: PFAM_Metallophos_C_1xzwB04 (B:851-917)
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Clans
(
)
(
)
Families
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(
)
Organisms
(
)
(
)
Clan
:
Calcineurin
(56)
Family
:
Metallophos
(45)
Ipomoea batatas (Sweet potato) (Convolvulus batatas)
(1)
1a
Metallophos-1xzwB01
B:627-826
1b
Metallophos-1xzwB02
B:627-826
Clan
:
no clan defined [family: Metallophos_C]
(5)
Family
:
Metallophos_C
(5)
Ipomoea batatas (Sweet potato) (Convolvulus batatas)
(1)
2a
Metallophos_C-1xzwB03
B:851-917
2b
Metallophos_C-1xzwB04
B:851-917
[
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]
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