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1XYH
Asym. Unit
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Asym.Unit (30 KB)
Biol.Unit 1 (27 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF RECOMBINANT HUMAN CYCLOPHILIN J
Authors
:
L. -L. Huang, X. -M. Zhao, C. -Q. Huang, L. Yu, Z. -X. Xia
Date
:
10 Nov 04 (Deposition) - 15 Mar 05 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Cyclophilin J, Beta-Barrel, Helix, Disulfide Bridge, Isomerase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. L. Huang, X. M. Zhao, C. Q. Huang, L. Yu, Z. X. Xia
Structure Of Recombinant Human Cyclophilin J, A Novel Member Of The Cyclophilin Family.
Acta Crystallogr. , Sect. D V. 61 316 2005
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
(0, 0)
Info
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Sorry, no Info available
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_023417 (D146E, chain A, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_023417
D
146
E
PPIL3_HUMAN
Polymorphism
7562391
A
D
146
E
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: CSA_PPIASE_2 (A:6-154)
2: CSA_PPIASE_1 (A:37-54)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CSA_PPIASE_2
PS50072
Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile.
PPIL3_HUMAN
6-154
1
A:6-154
2
CSA_PPIASE_1
PS00170
Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature.
PPIL3_HUMAN
37-54
1
A:37-54
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Exons
(6, 6)
Info
All Exons
Exon 1.3c (A:1-1)
Exon 1.5a (A:2-26)
Exon 1.6a (A:27-58)
Exon 1.7c (A:58-80)
Exon 1.9c (A:81-120)
Exon 1.10h (A:120-160)
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All Exon Boundaries
1: Boundary 1.1h/1.3c
2: Boundary 1.3c/1.5a
3: Boundary 1.5a/1.6a
4: Boundary 1.6a/1.7c
5: Boundary 1.7c/1.9c
6: Boundary 1.9c/1.10h
7: Boundary 1.10h/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1h
ENST00000392283
1h
ENSE00001844706
chr2:
201753877-201753679
199
PPIL3_HUMAN
-
0
0
-
-
1.3c
ENST00000392283
3c
ENSE00002195284
chr2:
201752408-201752336
73
PPIL3_HUMAN
1-1
1
1
A:1-1
1
1.5a
ENST00000392283
5a
ENSE00002036206
chr2:
201750495-201750421
75
PPIL3_HUMAN
2-26
25
1
A:2-26
25
1.6a
ENST00000392283
6a
ENSE00002072364
chr2:
201747158-201747065
94
PPIL3_HUMAN
27-58
32
1
A:27-58
32
1.7c
ENST00000392283
7c
ENSE00002167871
chr2:
201746211-201746144
68
PPIL3_HUMAN
58-80
23
1
A:58-80
23
1.9c
ENST00000392283
9c
ENSE00002084627
chr2:
201741760-201741642
119
PPIL3_HUMAN
81-120
40
1
A:81-120
40
1.10h
ENST00000392283
10h
ENSE00001922818
chr2:
201736244-201735679
566
PPIL3_HUMAN
120-161
42
1
A:120-160
41
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1xyha1 (A:1-160)
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Protein Domains
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)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Cyclophilin-like
(169)
Superfamily
:
Cyclophilin-like
(169)
Family
:
Cyclophilin (peptidylprolyl isomerase)
(160)
Protein domain
:
Cyclophilin-like protein PPIL3B
(3)
Human (Homo sapiens) [TaxId: 9606]
(3)
1a
d1xyha1
A:1-160
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1xyhA00 (A:1-160)
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)
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)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Cyclophilin
(95)
Homologous Superfamily
:
Cyclophilin
(95)
Human (Homo sapiens)
(58)
1a
1xyhA00
A:1-160
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Pro_isomerase_1xyhA01 (A:2-154)
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Clan
:
Cyclophil-like
(65)
Family
:
Pro_isomerase
(53)
Homo sapiens (Human)
(42)
1a
Pro_isomerase-1xyhA01
A:2-154
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