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1XY3
Asym. Unit
Info
Asym.Unit (351 KB)
Biol.Unit 1 (177 KB)
Biol.Unit 2 (176 KB)
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(1)
Title
:
URATE OXIDASE FROM ASPERGILLUS FLAVUS COMPLEXED WITH GUANINE
Authors
:
P. Retailleau, N. Colloc'H, D. Vivares, F. Bonnete, B. Castro, M. El Hajji, T. Prange
Date
:
09 Nov 04 (Deposition) - 22 Mar 05 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.20
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: E,F,G,H (1x)
Keywords
:
Oxidoreductase, Uric Acid Degradation, Dimeric Barrel, Tunnel-Shaped Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. Retailleau, N. Colloc'H, D. Vivares, F. Bonnete, B. Castro, M. El Hajji, T. Prange
Urate Oxidase From Aspergillus Flavus: New Crystal-Packing Contacts In Relation To The Content Of The Active Site.
Acta Crystallogr. , Sect. D V. 61 218 2005
(for further references see the
PDB file header
)
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Hetero Components
(2, 16)
Info
All Hetero Components
1a: GUANINE (GUNa)
1b: GUANINE (GUNb)
1c: GUANINE (GUNc)
1d: GUANINE (GUNd)
1e: GUANINE (GUNe)
1f: GUANINE (GUNf)
1g: GUANINE (GUNg)
1h: GUANINE (GUNh)
2a: N-ACETYL-SERINE (SACa)
2b: N-ACETYL-SERINE (SACb)
2c: N-ACETYL-SERINE (SACc)
2d: N-ACETYL-SERINE (SACd)
2e: N-ACETYL-SERINE (SACe)
2f: N-ACETYL-SERINE (SACf)
2g: N-ACETYL-SERINE (SACg)
2h: N-ACETYL-SERINE (SACh)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GUN
8
Ligand/Ion
GUANINE
2
SAC
8
Mod. Amino Acid
N-ACETYL-SERINE
[
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
PHE A:159 , ARG A:176 , VAL A:227 , GLN A:228 , ILE B:54 , THR B:57
BINDING SITE FOR RESIDUE GUN A 900
2
AC2
SOFTWARE
ALA A:56 , THR A:57 , PHE B:159 , ARG B:176 , VAL B:227 , GLN B:228
BINDING SITE FOR RESIDUE GUN B 901
3
AC3
SOFTWARE
PHE C:159 , ARG C:176 , VAL C:227 , GLN C:228 , ILE D:54 , ALA D:56 , THR D:57
BINDING SITE FOR RESIDUE GUN C 902
4
AC4
SOFTWARE
ILE C:54 , THR C:57 , PHE D:159 , ARG D:176 , VAL D:227 , GLN D:228
BINDING SITE FOR RESIDUE GUN D 903
5
AC5
SOFTWARE
PHE E:159 , ARG E:176 , VAL E:227 , GLN E:228 , THR F:57
BINDING SITE FOR RESIDUE GUN E 904
6
AC6
SOFTWARE
ILE E:54 , ALA E:56 , THR E:57 , PHE F:159 , ARG F:176 , VAL F:227 , GLN F:228
BINDING SITE FOR RESIDUE GUN F 905
7
AC7
SOFTWARE
PHE G:159 , ARG G:176 , VAL G:227 , GLN G:228 , ILE H:54 , ALA H:56 , THR H:57
BINDING SITE FOR RESIDUE GUN G 906
8
AC8
SOFTWARE
THR G:57 , PHE H:159 , ARG H:176 , VAL H:227 , GLN H:228
BINDING SITE FOR RESIDUE GUN H 907
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 8)
Info
All PROSITE Patterns/Profiles
1: URICASE (A:149-176,B:149-176,C:149-176,D:14...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
URICASE
PS00366
Uricase signature.
URIC_ASPFL
150-177
8
A:149-176
B:149-176
C:149-176
D:149-176
E:149-176
F:149-176
G:149-176
H:149-176
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 16)
Info
All SCOP Domains
1a: SCOP_d1xy3a1 (A:1-136)
1b: SCOP_d1xy3a2 (A:137-295)
1c: SCOP_d1xy3b1 (B:1-136)
1d: SCOP_d1xy3b2 (B:137-295)
1e: SCOP_d1xy3c1 (C:1-136)
1f: SCOP_d1xy3c2 (C:137-295)
1g: SCOP_d1xy3d1 (D:1-136)
1h: SCOP_d1xy3d2 (D:137-295)
1i: SCOP_d1xy3e1 (E:1-136)
1j: SCOP_d1xy3e2 (E:137-295)
1k: SCOP_d1xy3f1 (F:1-136)
1l: SCOP_d1xy3f2 (F:137-295)
1m: SCOP_d1xy3g1 (G:1-136)
1n: SCOP_d1xy3g2 (G:137-295)
1o: SCOP_d1xy3h1 (H:1-136)
1p: SCOP_d1xy3h2 (H:137-295)
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Classes
(
)
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)
Folds
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)
(
)
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(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
T-fold
(116)
Superfamily
:
Tetrahydrobiopterin biosynthesis enzymes-like
(113)
Family
:
Urate oxidase (uricase)
(60)
Protein domain
:
Urate oxidase (uricase)
(56)
Aspergillus flavus [TaxId: 5059]
(53)
1a
d1xy3a1
A:1-136
1b
d1xy3a2
A:137-295
1c
d1xy3b1
B:1-136
1d
d1xy3b2
B:137-295
1e
d1xy3c1
C:1-136
1f
d1xy3c2
C:137-295
1g
d1xy3d1
D:1-136
1h
d1xy3d2
D:137-295
1i
d1xy3e1
E:1-136
1j
d1xy3e2
E:137-295
1k
d1xy3f1
F:1-136
1l
d1xy3f2
F:137-295
1m
d1xy3g1
G:1-136
1n
d1xy3g2
G:137-295
1o
d1xy3h1
H:1-136
1p
d1xy3h2
H:137-295
[
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]
CATH Domains
(1, 8)
Info
all CATH domains
1a: CATH_1xy3A00 (A:2-295)
1b: CATH_1xy3B00 (B:2-295)
1c: CATH_1xy3D00 (D:2-295)
1d: CATH_1xy3E00 (E:2-295)
1e: CATH_1xy3F00 (F:2-295)
1f: CATH_1xy3G00 (G:2-295)
1g: CATH_1xy3H00 (H:2-295)
1h: CATH_1xy3C00 (C:2-299)
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)
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)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Roll
(3276)
Topology
:
Urate Oxidase
(38)
Homologous Superfamily
:
Urate Oxidase;
(38)
Aspergillus flavus. Organism_taxid: 5059.
(14)
1a
1xy3A00
A:2-295
1b
1xy3B00
B:2-295
1c
1xy3D00
D:2-295
1d
1xy3E00
E:2-295
1e
1xy3F00
F:2-295
1f
1xy3G00
G:2-295
1g
1xy3H00
H:2-295
1h
1xy3C00
C:2-299
[
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Pfam Domains
(1, 16)
Info
all PFAM domains
1a: PFAM_Uricase_1xy3H01 (H:141-290)
1b: PFAM_Uricase_1xy3H02 (H:141-290)
1c: PFAM_Uricase_1xy3H03 (H:141-290)
1d: PFAM_Uricase_1xy3H04 (H:141-290)
1e: PFAM_Uricase_1xy3H05 (H:141-290)
1f: PFAM_Uricase_1xy3H06 (H:141-290)
1g: PFAM_Uricase_1xy3H07 (H:141-290)
1h: PFAM_Uricase_1xy3H08 (H:141-290)
1i: PFAM_Uricase_1xy3H09 (H:141-290)
1j: PFAM_Uricase_1xy3H10 (H:141-290)
1k: PFAM_Uricase_1xy3H11 (H:141-290)
1l: PFAM_Uricase_1xy3H12 (H:141-290)
1m: PFAM_Uricase_1xy3H13 (H:141-290)
1n: PFAM_Uricase_1xy3H14 (H:141-290)
1o: PFAM_Uricase_1xy3H15 (H:141-290)
1p: PFAM_Uricase_1xy3H16 (H:141-290)
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(
)
Organisms
(
)
(
)
Clan
:
THBO-biosyn
(64)
Family
:
Uricase
(35)
Aspergillus flavus
(35)
1a
Uricase-1xy3H01
H:141-290
1b
Uricase-1xy3H02
H:141-290
1c
Uricase-1xy3H03
H:141-290
1d
Uricase-1xy3H04
H:141-290
1e
Uricase-1xy3H05
H:141-290
1f
Uricase-1xy3H06
H:141-290
1g
Uricase-1xy3H07
H:141-290
1h
Uricase-1xy3H08
H:141-290
1i
Uricase-1xy3H09
H:141-290
1j
Uricase-1xy3H10
H:141-290
1k
Uricase-1xy3H11
H:141-290
1l
Uricase-1xy3H12
H:141-290
1m
Uricase-1xy3H13
H:141-290
1n
Uricase-1xy3H14
H:141-290
1o
Uricase-1xy3H15
H:141-290
1p
Uricase-1xy3H16
H:141-290
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