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1XXF
Biol. Unit 1
Info
Asym.Unit (130 KB)
Biol.Unit 1 (125 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE FXIA CATALYTIC DOMAIN IN COMPLEX WITH ECOTIN MUTANT (ECOTINP)
Authors
:
L. Jin, P. Pandey, R. E. Babine, J. C. Gorga, K. J. Seidl, E. Gelfand, D. T. Weaver, S. S. Abdel-Meguid, J. E. Strickler
Date
:
04 Nov 04 (Deposition) - 16 Nov 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Fxia; Catalytic Domain; Serine Protease; Ecotin; Substrate- Like Interaction, Blood Clotting/Hydrolase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. Jin, P. Pandey, R. E. Babine, J. C. Gorga, K. J. Seidl, E. Gelfand, D. T. Weaver, S. S. Abdel-Meguid, J. E. Strickler
Crystal Structures Of The Fxia Catalytic Domain In Complex With Ecotin Mutants Reveal Substrate-Like Interactions
J. Biol. Chem. V. 280 4704 2005
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
1a: SODIUM ION (NAa)
1b: SODIUM ION (NAb)
View:
Select:
Label:
Sorry, no Info available
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ILE B:160 , ALA B:183 , ASP B:189 , TYR B:228
BINDING SITE FOR RESIDUE NA B 1001
2
AC2
SOFTWARE
TRP B:137 , THR B:139 , PRO B:198 , SER B:198B
BINDING SITE FOR RESIDUE NA B 1002
[
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]
SAPs(SNPs)/Variants
(23, 46)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
01: VAR_011778 (W27R, chain A/B, )
02: VAR_067945 (W29R, chain A/B, )
03: VAR_067946 (V31M, chain A/B, )
04: VAR_012092 (T32N, chain A/B, )
05: VAR_054901 (G42V, chain A/B, )
06: VAR_012093 (A56V, chain A/B, )
07: VAR_067947 (I77K, chain A/B, )
08: VAR_012094 (F82V, chain A/B, )
09: VAR_067948 (I103S, chain A/B, )
10: VAR_012095 (A115I, chain A/B, )
11: VAR_067949 (S126P, chain A/B, )
12: VAR_067950 (D129G, chain A/B, )
13: VAR_054902 (Y133H, chain A/B, )
14: VAR_067951 (C136F, chain A/B, )
15: VAR_067952 (D149E, chain A/A/B, )
16: VAR_054903 (P161L, chain A/B, )
17: VAR_054904 (E186K, chain A/B, )
18: VAR_067953 (S195L, chain A/B, )
19: VAR_054905 (W203S, chain A/B, )
20: VAR_012096 (S214R, chain A/B, )
21: VAR_067954 (E217K, chain A/B, )
22: VAR_067955 (Y228H, chain A/B, )
23: VAR_054906 (I238S, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_011778
W
399
R
FA11_HUMAN
Polymorphism
1800439
A/B
W
27
R
02
UniProt
VAR_067945
W
401
R
FA11_HUMAN
Disease (FA11D)
281875262
A/B
W
29
R
03
UniProt
VAR_067946
V
403
M
FA11_HUMAN
Disease (FA11D)
281875266
A/B
V
31
M
04
UniProt
VAR_012092
T
404
N
FA11_HUMAN
Disease (FA11D)
121965067
A/B
T
32
N
05
UniProt
VAR_054901
G
418
V
FA11_HUMAN
Disease (FA11D)
121965071
A/B
G
42
V
06
UniProt
VAR_012093
A
430
V
FA11_HUMAN
Disease (FA11D)
121965068
A/B
A
56
V
07
UniProt
VAR_067947
I
454
K
FA11_HUMAN
Disease (FA11D)
281875241
A/B
I
77
K
08
UniProt
VAR_012094
F
460
V
FA11_HUMAN
Disease (FA11D)
121965065
A/B
F
82
V
09
UniProt
VAR_067948
I
481
S
FA11_HUMAN
Disease (FA11D)
281875242
A/B
I
103
S
10
UniProt
VAR_012095
T
493
I
FA11_HUMAN
Disease (FA11D)
---
A/B
A
115
I
11
UniProt
VAR_067949
S
503
P
FA11_HUMAN
Disease (FA11D)
140068026
A/B
S
126
P
12
UniProt
VAR_067950
D
506
G
FA11_HUMAN
Disease (FA11D)
281875258
A/B
D
129
G
13
UniProt
VAR_054902
Y
511
H
FA11_HUMAN
Disease (FA11D)
281875278
A/B
Y
133
H
14
UniProt
VAR_067951
C
514
F
FA11_HUMAN
Disease (FA11D)
281875249
A/B
C
136
F
15
UniProt
VAR_067952
D
526
E
FA11_HUMAN
Disease (FA11D)
281875263
A
A/B
D
148
149
E
16
UniProt
VAR_054903
P
538
L
FA11_HUMAN
Disease (FA11D)
139695003
A/B
P
161
L
17
UniProt
VAR_054904
E
565
K
FA11_HUMAN
Disease (FA11D)
281875275
A/B
E
186
K
18
UniProt
VAR_067953
S
575
L
FA11_HUMAN
Disease (FA11D)
281875250
A/B
S
195
L
19
UniProt
VAR_054905
W
587
S
FA11_HUMAN
Disease (FA11D)
121965072
A/B
W
203
S
20
UniProt
VAR_012096
S
594
R
FA11_HUMAN
Disease (FA11D)
28934609
A/B
S
214
R
21
UniProt
VAR_067954
E
597
K
FA11_HUMAN
Disease (FA11D)
281875251
A/B
E
217
K
22
UniProt
VAR_067955
Y
608
H
FA11_HUMAN
Disease (FA11D)
281875255
A/B
Y
228
H
23
UniProt
VAR_054906
I
618
S
FA11_HUMAN
Disease (FA11D)
281875276
A/B
I
238
S
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(3, 6)
Info
All PROSITE Patterns/Profiles
1: TRYPSIN_DOM (A:16-243,B:16-243)
2: TRYPSIN_HIS (A:53-58,B:53-58)
3: TRYPSIN_SER (A:189-198B,B:189-198B)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TRYPSIN_DOM
PS50240
Serine proteases, trypsin domain profile.
FA11_HUMAN
388-623
2
A:16-243
B:16-243
2
TRYPSIN_HIS
PS00134
Serine proteases, trypsin family, histidine active site.
FA11_HUMAN
427-432
2
A:53-58
B:53-58
3
TRYPSIN_SER
PS00135
Serine proteases, trypsin family, serine active site.
FA11_HUMAN
569-580
2
A:189-198B
B:189-198B
[
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]
Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1xxfc_ (C:)
1b: SCOP_d1xxfd_ (D:)
2a: SCOP_d1xxfa_ (A:)
2b: SCOP_d1xxfb_ (B:)
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)
(
)
Folds
(
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(
)
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(
)
(
)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Ecotin, trypsin inhibitor
(19)
Superfamily
:
Ecotin, trypsin inhibitor
(19)
Family
:
Ecotin, trypsin inhibitor
(19)
Protein domain
:
Ecotin, trypsin inhibitor
(17)
Escherichia coli [TaxId: 562]
(17)
1a
d1xxfc_
C:
1b
d1xxfd_
D:
Fold
:
Trypsin-like serine proteases
(1752)
Superfamily
:
Trypsin-like serine proteases
(1752)
Family
:
Eukaryotic proteases
(1343)
Protein domain
:
Coagulation factor XI
(26)
Human (Homo sapiens) [TaxId: 9606]
(26)
2a
d1xxfa_
A:
2b
d1xxfb_
B:
[
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CATH Domains
(2, 6)
Info
all CATH domains
1a: CATH_1xxfA02 (A:28-121,A:234-244)
1b: CATH_1xxfB02 (B:28-121,B:234-244)
1c: CATH_1xxfA01 (A:16-27,A:122-233)
1d: CATH_1xxfB01 (B:16-27,B:122-233)
2a: CATH_1xxfC00 (C:5-142)
2b: CATH_1xxfD00 (D:5-142)
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Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Thrombin, subunit H
(1535)
Homologous Superfamily
:
Trypsin-like serine proteases
(1488)
Human (Homo sapiens)
(615)
1a
1xxfA02
A:28-121,A:234-244
1b
1xxfB02
B:28-121,B:234-244
1c
1xxfA01
A:16-27,A:122-233
1d
1xxfB01
B:16-27,B:122-233
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
[code=2.60.40.550, no name defined]
(17)
Human (Homo sapiens)
(4)
2a
1xxfC00
C:5-142
2b
1xxfD00
D:5-142
[
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_Trypsin_1xxfB01 (B:16-238)
1b: PFAM_Trypsin_1xxfB02 (B:16-238)
2a: PFAM_Ecotin_1xxfD01 (D:7-133)
2b: PFAM_Ecotin_1xxfD02 (D:7-133)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
Peptidase_PA
(797)
Family
:
Trypsin
(679)
Homo sapiens (Human)
(339)
1a
Trypsin-1xxfB01
B:16-238
1b
Trypsin-1xxfB02
B:16-238
Clan
:
no clan defined [family: Ecotin]
(10)
Family
:
Ecotin
(10)
Escherichia coli (strain K12)
(9)
2a
Ecotin-1xxfD01
D:7-133
2b
Ecotin-1xxfD02
D:7-133
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Asym.Unit (130 KB)
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