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1XXD
Biol. Unit 1
Info
Asym.Unit (128 KB)
Biol.Unit 1 (123 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE FXIA CATALYTIC DOMAIN IN COMPLEX WITH MUTATED ECOTIN
Authors
:
L. Jin, P. Pandey, R. E. Babine, J. C. Gorga, K. J. Seidl, E. Gelfand, D. T. Weaver, S. S. Abdel-Meguid, J. E. Strickler
Date
:
04 Nov 04 (Deposition) - 16 Nov 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.91
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Fxia; Catalytic Domain; Serine Protein; Ecotin, Blood Clotting/Hydrolase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. Jin, P. Pandey, R. E. Babine, J. C. Gorga, K. J. Seidl, E. Gelfand, D. T. Weaver, S. S. Abdel-Meguid, J. E. Strickler
Crystal Structures Of The Fxia Catalytic Domain In Complex With Ecotin Mutants Reveal Substrate-Like Interactions
J. Biol. Chem. V. 280 4704 2005
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
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Label:
Sorry, no Info available
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]
Sites
(0, 0)
Info
All Sites
View:
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Label:
Sorry, no Info available
[
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]
SAPs(SNPs)/Variants
(23, 46)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
01: VAR_011778 (W27R, chain A/B, )
02: VAR_067945 (W29R, chain A/B, )
03: VAR_067946 (V31M, chain A/B, )
04: VAR_012092 (T32N, chain A/B, )
05: VAR_054901 (G42V, chain A/B, )
06: VAR_012093 (A56V, chain A/B, )
07: VAR_067947 (I77K, chain A/B, )
08: VAR_012094 (F82V, chain A/B, )
09: VAR_067948 (I103S, chain A/B, )
10: VAR_012095 (A115I, chain A/B, )
11: VAR_067949 (S126P, chain A/B, )
12: VAR_067950 (D129G, chain A/B, )
13: VAR_054902 (Y133H, chain A/B, )
14: VAR_067951 (C136F, chain A/B, )
15: VAR_067952 (D149E, chain A/A/B, )
16: VAR_054903 (P161L, chain A/B, )
17: VAR_054904 (E186K, chain A/B, )
18: VAR_067953 (S195L, chain A/B, )
19: VAR_054905 (W203S, chain A/B, )
20: VAR_012096 (S214R, chain A/B, )
21: VAR_067954 (E217K, chain A/B, )
22: VAR_067955 (Y228H, chain A/B, )
23: VAR_054906 (I238S, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_011778
W
399
R
FA11_HUMAN
Polymorphism
1800439
A/B
W
27
R
02
UniProt
VAR_067945
W
401
R
FA11_HUMAN
Disease (FA11D)
281875262
A/B
W
29
R
03
UniProt
VAR_067946
V
403
M
FA11_HUMAN
Disease (FA11D)
281875266
A/B
V
31
M
04
UniProt
VAR_012092
T
404
N
FA11_HUMAN
Disease (FA11D)
121965067
A/B
T
32
N
05
UniProt
VAR_054901
G
418
V
FA11_HUMAN
Disease (FA11D)
121965071
A/B
G
42
V
06
UniProt
VAR_012093
A
430
V
FA11_HUMAN
Disease (FA11D)
121965068
A/B
A
56
V
07
UniProt
VAR_067947
I
454
K
FA11_HUMAN
Disease (FA11D)
281875241
A/B
I
77
K
08
UniProt
VAR_012094
F
460
V
FA11_HUMAN
Disease (FA11D)
121965065
A/B
F
82
V
09
UniProt
VAR_067948
I
481
S
FA11_HUMAN
Disease (FA11D)
281875242
A/B
I
103
S
10
UniProt
VAR_012095
T
493
I
FA11_HUMAN
Disease (FA11D)
---
A/B
A
115
I
11
UniProt
VAR_067949
S
503
P
FA11_HUMAN
Disease (FA11D)
140068026
A/B
S
126
P
12
UniProt
VAR_067950
D
506
G
FA11_HUMAN
Disease (FA11D)
281875258
A/B
D
129
G
13
UniProt
VAR_054902
Y
511
H
FA11_HUMAN
Disease (FA11D)
281875278
A/B
Y
133
H
14
UniProt
VAR_067951
C
514
F
FA11_HUMAN
Disease (FA11D)
281875249
A/B
C
136
F
15
UniProt
VAR_067952
D
526
E
FA11_HUMAN
Disease (FA11D)
281875263
A
A/B
D
148
149
E
16
UniProt
VAR_054903
P
538
L
FA11_HUMAN
Disease (FA11D)
139695003
A/B
P
161
L
17
UniProt
VAR_054904
E
565
K
FA11_HUMAN
Disease (FA11D)
281875275
A/B
E
186
K
18
UniProt
VAR_067953
S
575
L
FA11_HUMAN
Disease (FA11D)
281875250
A/B
S
195
L
19
UniProt
VAR_054905
W
587
S
FA11_HUMAN
Disease (FA11D)
121965072
A/B
W
203
S
20
UniProt
VAR_012096
S
594
R
FA11_HUMAN
Disease (FA11D)
28934609
A/B
S
214
R
21
UniProt
VAR_067954
E
597
K
FA11_HUMAN
Disease (FA11D)
281875251
A/B
E
217
K
22
UniProt
VAR_067955
Y
608
H
FA11_HUMAN
Disease (FA11D)
281875255
A/B
Y
228
H
23
UniProt
VAR_054906
I
618
S
FA11_HUMAN
Disease (FA11D)
281875276
A/B
I
238
S
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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]
PROSITE Patterns/Profiles
(3, 6)
Info
All PROSITE Patterns/Profiles
1: TRYPSIN_DOM (A:16-243,B:16-243)
2: TRYPSIN_HIS (A:53-58,B:53-58)
3: TRYPSIN_SER (A:189-198B,B:189-198B)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TRYPSIN_DOM
PS50240
Serine proteases, trypsin domain profile.
FA11_HUMAN
388-623
2
A:16-243
B:16-243
2
TRYPSIN_HIS
PS00134
Serine proteases, trypsin family, histidine active site.
FA11_HUMAN
427-432
2
A:53-58
B:53-58
3
TRYPSIN_SER
PS00135
Serine proteases, trypsin family, serine active site.
FA11_HUMAN
569-580
2
A:189-198B
B:189-198B
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]
Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1xxdc_ (C:)
1b: SCOP_d1xxdd_ (D:)
2a: SCOP_d1xxda_ (A:)
2b: SCOP_d1xxdb_ (B:)
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Ecotin, trypsin inhibitor
(19)
Superfamily
:
Ecotin, trypsin inhibitor
(19)
Family
:
Ecotin, trypsin inhibitor
(19)
Protein domain
:
Ecotin, trypsin inhibitor
(17)
Escherichia coli [TaxId: 562]
(17)
1a
d1xxdc_
C:
1b
d1xxdd_
D:
Fold
:
Trypsin-like serine proteases
(1752)
Superfamily
:
Trypsin-like serine proteases
(1752)
Family
:
Eukaryotic proteases
(1343)
Protein domain
:
Coagulation factor XI
(26)
Human (Homo sapiens) [TaxId: 9606]
(26)
2a
d1xxda_
A:
2b
d1xxdb_
B:
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CATH Domains
(2, 6)
Info
all CATH domains
1a: CATH_1xxdA02 (A:28-121,A:234-245)
1b: CATH_1xxdB02 (B:28-121,B:234-245)
1c: CATH_1xxdA01 (A:16-27,A:122-233)
1d: CATH_1xxdB01 (B:16-27,B:122-233)
2a: CATH_1xxdD00 (D:5-142)
2b: CATH_1xxdC00 (C:6-142)
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)
(
)
Architectures
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(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Thrombin, subunit H
(1535)
Homologous Superfamily
:
Trypsin-like serine proteases
(1488)
Human (Homo sapiens)
(615)
1a
1xxdA02
A:28-121,A:234-245
1b
1xxdB02
B:28-121,B:234-245
1c
1xxdA01
A:16-27,A:122-233
1d
1xxdB01
B:16-27,B:122-233
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
[code=2.60.40.550, no name defined]
(17)
Human (Homo sapiens)
(4)
2a
1xxdD00
D:5-142
2b
1xxdC00
C:6-142
[
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_Trypsin_1xxdB01 (B:16-238)
1b: PFAM_Trypsin_1xxdB02 (B:16-238)
2a: PFAM_Ecotin_1xxdD01 (D:7-133)
2b: PFAM_Ecotin_1xxdD02 (D:7-133)
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Clans
(
)
(
)
Families
(
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(
)
Organisms
(
)
(
)
Clan
:
Peptidase_PA
(797)
Family
:
Trypsin
(679)
Homo sapiens (Human)
(339)
1a
Trypsin-1xxdB01
B:16-238
1b
Trypsin-1xxdB02
B:16-238
Clan
:
no clan defined [family: Ecotin]
(10)
Family
:
Ecotin
(10)
Escherichia coli (strain K12)
(9)
2a
Ecotin-1xxdD01
D:7-133
2b
Ecotin-1xxdD02
D:7-133
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