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Asym. Unit
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Asym.Unit (57 KB)
Biol.Unit 1 (52 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF VPS4B
Authors
:
A. Scott, W. I. Sundquist, C. P. Hill
Date
:
01 Nov 04 (Deposition) - 11 Oct 05 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Vps4B, Skd1, Aaa Atpase, Protein Transport
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Scott, H. Y. Chung, M. Gonciarz-Swiatek, G. C. Hill, F. G. Whitby, J. Gaspar, J. M. Holton, R. Viswanathan, S. Ghaffarian, C. P. Hill, W. I. Sundquist
Structural And Mechanistic Studies Of Vps4 Proteins
Embo J. V. 24 3658 2005
(for further references see the
PDB file header
)
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: SULFATE ION (SO4a)
1b: SULFATE ION (SO4b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
SO4
2
Ligand/Ion
SULFATE ION
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
PRO A:176 , GLY A:177 , THR A:178 , GLY A:179 , LYS A:180
BINDING SITE FOR RESIDUE SO4 A 601
2
AC2
SOFTWARE
HIS A:304 , ARG A:327 , ARG A:331 , PRO A:400 , GLY A:401 , ASP A:402
BINDING SITE FOR RESIDUE SO4 A 602
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: AAA (A:272-291)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
AAA
PS00674
AAA-protein family signature.
VPS4B_HUMAN
272-291
1
A:272-291
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Exons
(7, 7)
Info
All Exons
Exon 1.5 (A:123-162)
Exon 1.6 (A:162-214)
Exon 1.7 (A:214-264)
Exon 1.8 (A:264-291)
Exon 1.9 (A:291-364)
Exon 1.10 (A:365-411)
Exon 1.11 (A:412-444)
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All Exon Boundaries
1: Boundary 1.4/1.5
2: Boundary 1.5/1.6
3: Boundary 1.6/1.7
4: Boundary 1.7/1.8
5: Boundary 1.8/1.9
6: Boundary 1.9/1.10
7: Boundary 1.10/1.11
8: Boundary 1.11/-
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000238497
1
ENSE00001141776
chr18:
61089693-61089466
228
VPS4B_HUMAN
1-9
9
0
-
-
1.2
ENST00000238497
2
ENSE00000807344
chr18:
61078811-61078700
112
VPS4B_HUMAN
10-47
38
0
-
-
1.3
ENST00000238497
3
ENSE00000670192
chr18:
61077679-61077523
157
VPS4B_HUMAN
47-99
53
0
-
-
1.4
ENST00000238497
4
ENSE00000670201
chr18:
61074732-61074665
68
VPS4B_HUMAN
99-122
24
0
-
-
1.5
ENST00000238497
5
ENSE00000670207
chr18:
61071059-61070940
120
VPS4B_HUMAN
122-162
41
1
A:123-162
40
1.6
ENST00000238497
6
ENSE00000670214
chr18:
61067936-61067780
157
VPS4B_HUMAN
162-214
53
1
A:162-214
53
1.7
ENST00000238497
7
ENSE00000807343
chr18:
61067429-61067281
149
VPS4B_HUMAN
214-264
51
1
A:214-264
51
1.8
ENST00000238497
8
ENSE00000670221
chr18:
61066556-61066475
82
VPS4B_HUMAN
264-291
28
1
A:264-291
28
1.9
ENST00000238497
9
ENSE00000670222
chr18:
61064486-61064267
220
VPS4B_HUMAN
291-364
74
1
A:291-364
74
1.10
ENST00000238497
10
ENSE00000670223
chr18:
61060782-61060642
141
VPS4B_HUMAN
365-411
47
1
A:365-411
47
1.11
ENST00000238497
11
ENSE00001104872
chr18:
61058309-61056423
1887
VPS4B_HUMAN
412-444
33
1
A:412-444
33
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SCOP Domains
(0, 0)
Info
All SCOP Domains
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1xwiA01 (A:123-300,A:424-441)
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Classes
(
)
(
)
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(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
Human (Homo sapiens)
(413)
1a
1xwiA01
A:123-300,A:424-441
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Pfam Domains
(2, 2)
Info
all PFAM domains
1a: PFAM_AAA_1xwiA01 (A:170-300)
2a: PFAM_Vps4_C_1xwiA02 (A:380-441)
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Clans
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)
Families
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)
(
)
Organisms
(
)
(
)
Clan
:
P-loop_NTPase
(1112)
Family
:
AAA
(26)
Homo sapiens (Human)
(2)
1a
AAA-1xwiA01
A:170-300
Clan
:
no clan defined [family: Vps4_C]
(9)
Family
:
Vps4_C
(9)
Homo sapiens (Human)
(1)
2a
Vps4_C-1xwiA02
A:380-441
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Chain A
Asymmetric Unit 1
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