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Getting 'Exon' information from database.
1XWH
Asym. Unit
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Asym.Unit (324 KB)
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Models
(20 )
Title
:
NMR STRUCTURE OF THE FIRST PHD FINGER OF AUTOIMMUNE REGULATOR PROTEIN (AIRE1): INSIGHTS INTO APECED
Authors
:
M. J. Bottomley, G. Stier, J. Krasotkina, G. Legube, B. Simon, A. Akhtar, M. Sattler, G. Musco
Date
:
01 Nov 04 (Deposition) - 25 Jan 05 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Keywords
:
Phd Domain, Zn Binding Domain, Apeced, Nucleosome, E3 Ligase, Transcription
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. J. Bottomley, G. Stier, D. Pennacchini, G. Legube, B. Simon, A. Akhtar, M. Sattler, G. Musco
Nmr Structure Of The First Phd Finger Of Autoimmune Regulator Protein (Aire1). Insights Into Autoimmune Polyendocrinopathy-Candidiasis-Ectodermal Dystrophy (Apeced) Disease
J. Biol. Chem. V. 280 11505 2005
(for further references see the
PDB file header
)
[
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: ZINC ION (ZNa)
1b: ZINC ION (ZNb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ZN
2
Ligand/Ion
ZINC ION
[
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]
Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS A:299 , VAL A:301 , CYS A:302 , HIS A:319 , CYS A:322
BINDING SITE FOR RESIDUE ZN A 355
2
AC2
SOFTWARE
CYS A:311 , CYS A:314 , CYS A:337 , CYS A:340
BINDING SITE FOR RESIDUE ZN A 356
[
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]
SAPs(SNPs)/Variants
(5, 5)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
1: VAR_013721 (V301M, chain A, )
2: VAR_013722 (G305S, chain A, )
3: VAR_013723 (C311Y, chain A, )
4: VAR_026485 (P326L, chain A, )
5: VAR_013724 (P326Q, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_013721
V
301
M
AIRE_HUMAN
Disease (APS1)
150634562
A
V
301
M
2
UniProt
VAR_013722
G
305
S
AIRE_HUMAN
Polymorphism
---
A
G
305
S
3
UniProt
VAR_013723
C
311
Y
AIRE_HUMAN
Disease (APS1)
---
A
C
311
Y
4
UniProt
VAR_026485
P
326
L
AIRE_HUMAN
Disease (APS1)
179363888
A
P
326
L
5
UniProt
VAR_013724
P
326
Q
AIRE_HUMAN
Disease (APS1)
179363885
A
P
326
Q
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: ZF_PHD_2 (A:296-343)
2: ZF_PHD_1 (A:299-340|-)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ZF_PHD_2
PS50016
Zinc finger PHD-type profile.
AIRE_HUMAN
296-343
1
A:296-343
2
ZF_PHD_1
PS01359
Zinc finger PHD-type signature.
AIRE_HUMAN
299-340
434-475
1
A:299-340
-
[
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]
Exons
(3, 3)
Info
All Exons
Exon 1.5 (A:289-293 (gaps))
Exon 1.6e (A:294-332)
Exon 1.7 (A:332-354)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.4d/1.5
2: Boundary 1.5/1.6e
3: Boundary 1.6e/1.7
4: Boundary 1.7/1.8b
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1c
ENST00000291582
1c
ENSE00001050710
chr21:
45705763-45706021
259
AIRE_HUMAN
1-44
44
0
-
-
1.2
ENST00000291582
2
ENSE00001050715
chr21:
45706440-45706614
175
AIRE_HUMAN
45-103
59
0
-
-
1.3a
ENST00000291582
3a
ENSE00001050714
chr21:
45706861-45707016
156
AIRE_HUMAN
103-155
53
0
-
-
1.3c
ENST00000291582
3c
ENSE00001050716
chr21:
45707400-45707474
75
AIRE_HUMAN
155-180
26
0
-
-
1.4a
ENST00000291582
4a
ENSE00001050703
chr21:
45708228-45708341
114
AIRE_HUMAN
180-218
39
0
-
-
1.4d
ENST00000291582
4d
ENSE00001050721
chr21:
45709540-45709685
146
AIRE_HUMAN
218-266
49
0
-
-
1.5
ENST00000291582
5
ENSE00001050719
chr21:
45709871-45709951
81
AIRE_HUMAN
267-293
27
1
A:289-293 (gaps)
17
1.6e
ENST00000291582
6e
ENSE00001136688
chr21:
45710978-45711093
116
AIRE_HUMAN
294-332
39
1
A:294-332
39
1.7
ENST00000291582
7
ENSE00001325901
chr21:
45712185-45712284
100
AIRE_HUMAN
332-365
34
1
A:332-354
23
1.8b
ENST00000291582
8b
ENSE00001110072
chr21:
45712876-45713058
183
AIRE_HUMAN
366-426
61
0
-
-
1.9
ENST00000291582
9
ENSE00001598102
chr21:
45713672-45713793
122
AIRE_HUMAN
427-467
41
0
-
-
1.10b
ENST00000291582
10b
ENSE00001675836
chr21:
45714284-45714386
103
AIRE_HUMAN
467-501
35
0
-
-
1.11
ENST00000291582
11
ENSE00001744012
chr21:
45716266-45716328
63
AIRE_HUMAN
502-522
21
0
-
-
1.12c
ENST00000291582
12c
ENSE00001643309
chr21:
45717539-45718102
564
AIRE_HUMAN
523-545
23
0
-
-
[
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]
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1xwha_ (A:)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Small proteins
(3458)
Fold
:
FYVE/PHD zinc finger
(57)
Superfamily
:
FYVE/PHD zinc finger
(57)
Family
:
automated matches
(18)
Protein domain
:
automated matches
(18)
Human (Homo sapiens) [TaxId: 9606]
(16)
1a
d1xwha_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1xwhA00 (A:289-354)
View:
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Label:
Classes
(
)
(
)
Architectures
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)
(
)
Topologies
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)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Herpes Virus-1
(49)
Homologous Superfamily
:
Zinc/RING finger domain, C3HC4 (zinc finger)
(47)
Human (Homo sapiens)
(26)
1a
1xwhA00
A:289-354
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_PHD_1xwhA01 (A:298-343)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
zf-FYVE-PHD
(57)
Family
:
PHD
(44)
Homo sapiens (Human)
(33)
1a
PHD-1xwhA01
A:298-343
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(currently selected atoms:
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Protein
Nucleic
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Sidechain
Hetero
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Solvent
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Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
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