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1XW6
Asym. Unit
Info
Asym.Unit (167 KB)
Biol.Unit 1 (83 KB)
Biol.Unit 2 (83 KB)
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(1)
Title
:
1.9 ANGSTROM RESOLUTION STRUCTURE OF HUMAN GLUTATHIONE S-TRANSFERASE M1A-1A COMPLEXED WITH GLUTATHIONE
Authors
:
Y. Patskovsky, L. Patskovska, S. C. Almo, I. Listowsky
Date
:
29 Oct 04 (Deposition) - 21 Dec 04 (Release) - 09 Jun 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Transferase, Glutathione, Conjugation, Detoxification, Cytosolic, Dimer, Active Site
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Patskovsky, L. Patskovska, S. C. Almo, I. Listowsky
Transition State Model And Mechanism Of Nucleophilic Aromatic Substitution Reactions Catalyzed By Human Glutathione S-Transferase M1A-1A.
Biochemistry V. 45 3852 2006
(for further references see the
PDB file header
)
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Hetero Components
(1, 4)
Info
All Hetero Components
1a: GLUTATHIONE (GSHa)
1b: GLUTATHIONE (GSHb)
1c: GLUTATHIONE (GSHc)
1d: GLUTATHIONE (GSHd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GSH
4
Ligand/Ion
GLUTATHIONE
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
TYR A:6 , TRP A:7 , LEU A:12 , ARG A:42 , TRP A:45 , LYS A:49 , ASN A:58 , LEU A:59 , GLN A:71 , SER A:72 , MET A:104 , HOH A:764 , HOH A:790 , HOH A:807 , HOH A:822 , HOH A:886 , HOH A:938 , ASP B:105
BINDING SITE FOR RESIDUE GSH A 750
2
AC2
SOFTWARE
ASP A:105 , TYR B:6 , TRP B:7 , LEU B:12 , ARG B:42 , TRP B:45 , LYS B:49 , ASN B:58 , LEU B:59 , PRO B:60 , GLN B:71 , SER B:72 , HOH B:755 , HOH B:756 , HOH B:927
BINDING SITE FOR RESIDUE GSH B 751
3
AC3
SOFTWARE
TYR C:6 , TRP C:7 , ARG C:42 , TRP C:45 , LYS C:49 , ASN C:58 , LEU C:59 , GLN C:71 , SER C:72 , HOH C:770 , HOH C:771 , HOH C:829 , HOH C:834 , HOH C:885 , HOH C:887 , ASP D:105
BINDING SITE FOR RESIDUE GSH C 752
4
AC4
SOFTWARE
ASP C:105 , TYR D:6 , TRP D:7 , LEU D:12 , ARG D:42 , TRP D:45 , LYS D:49 , ASN D:58 , LEU D:59 , GLN D:71 , SER D:72 , MET D:104 , HOH D:766 , HOH D:767 , HOH D:818 , HOH D:872 , HOH D:886
BINDING SITE FOR RESIDUE GSH D 753
[
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SAPs(SNPs)/Variants
(2, 8)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_003617 (K172N, chain A/B/C/D, )
2: VAR_014497 (S209T, chain A/B/C/D, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_003617
K
173
N
GSTM1_HUMAN
Polymorphism
1065411
A/B/C/D
K
172
N
2
UniProt
VAR_014497
S
210
T
GSTM1_HUMAN
Polymorphism
449856
A/B/C/D
S
209
T
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: GST_CTER (A:89-207,B:89-207,C:89-207,D:89-20...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GST_CTER
PS50405
Soluble glutathione S-transferase C-terminal domain profile.
GSTM1_HUMAN
90-208
4
A:89-207
B:89-207
C:89-207
D:89-207
[
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Exons
(8, 32)
Info
All Exons
Exon 1.1e (A:1-11 | B:1-11 | C:1-11 | D:1-11)
Exon 1.2a (A:12-37 | B:12-37 | C:12-37 | D:12...)
Exon 1.2d (A:37-58 | B:37-58 | C:37-58 | D:37...)
Exon 1.2h (A:59-86 | B:59-86 | C:59-86 | D:59...)
Exon 1.3 (A:86-119 | B:86-119 | C:86-119 | D...)
Exon 1.4b (A:120-151 | B:120-151 | C:120-151 ...)
Exon 1.5a (A:152-188 | B:152-188 | C:152-188 ...)
Exon 1.7d (A:189-217 | B:189-217 | C:189-217 ...)
View:
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Label:
All Exon Boundaries
1: Boundary -/1.1e
2: Boundary 1.1e/1.2a
3: Boundary 1.2a/1.2d
4: Boundary 1.2d/1.2h
5: Boundary 1.2h/1.3
6: Boundary 1.3/1.4b
7: Boundary 1.4b/1.5a
8: Boundary 1.5a/1.7d
9: Boundary 1.7d/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1e
ENST00000309851
1e
ENSE00001850517
chr1:
110230472-110230531
60
GSTM1_HUMAN
1-12
12
4
A:1-11
B:1-11
C:1-11
D:1-11
11
11
11
11
1.2a
ENST00000309851
2a
ENSE00001753103
chr1:
110230792-110230867
76
GSTM1_HUMAN
13-38
26
4
A:12-37
B:12-37
C:12-37
D:12-37
26
26
26
26
1.2d
ENST00000309851
2d
ENSE00001706290
chr1:
110231295-110231359
65
GSTM1_HUMAN
38-59
22
4
A:37-58
B:37-58
C:37-58
D:37-58
22
22
22
22
1.2h
ENST00000309851
2h
ENSE00001631442
chr1:
110231670-110231751
82
GSTM1_HUMAN
60-87
28
4
A:59-86
B:59-86
C:59-86
D:59-86
28
28
28
28
1.3
ENST00000309851
3
ENSE00000826761
chr1:
110231847-110231947
101
GSTM1_HUMAN
87-120
34
4
A:86-119
B:86-119
C:86-119
D:86-119
34
34
34
34
1.4b
ENST00000309851
4b
ENSE00001715778
chr1:
110232893-110232988
96
GSTM1_HUMAN
121-152
32
4
A:120-151
B:120-151
C:120-151
D:120-151
32
32
32
32
1.5a
ENST00000309851
5a
ENSE00001716973
chr1:
110233076-110233186
111
GSTM1_HUMAN
153-189
37
4
A:152-188
B:152-188
C:152-188
D:152-188
37
37
37
37
1.7d
ENST00000309851
7d
ENSE00001825142
chr1:
110235828-110236367
540
GSTM1_HUMAN
190-218
29
4
A:189-217
B:189-217
C:189-217
D:189-217
29
29
29
29
[
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]
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d1xw6a1 (A:85-217)
1b: SCOP_d1xw6b1 (B:85-217)
1c: SCOP_d1xw6c1 (C:85-217)
1d: SCOP_d1xw6d1 (D:85-217)
2a: SCOP_d1xw6a2 (A:1-84)
2b: SCOP_d1xw6b2 (B:1-84)
2c: SCOP_d1xw6c2 (C:1-84)
2d: SCOP_d1xw6d2 (D:1-84)
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)
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(
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)
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
GST C-terminal domain-like
(353)
Superfamily
:
GST C-terminal domain-like
(353)
Family
:
Glutathione S-transferase (GST), C-terminal domain
(263)
Protein domain
:
Class mu GST
(33)
Human (Homo sapiens) [TaxId: 9606]
(15)
1a
d1xw6a1
A:85-217
1b
d1xw6b1
B:85-217
1c
d1xw6c1
C:85-217
1d
d1xw6d1
D:85-217
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Thioredoxin fold
(994)
Superfamily
:
Thioredoxin-like
(992)
Family
:
Glutathione S-transferase (GST), N-terminal domain
(216)
Protein domain
:
Class mu GST
(33)
Human (Homo sapiens) [TaxId: 9606]
(15)
2a
d1xw6a2
A:1-84
2b
d1xw6b2
B:1-84
2c
d1xw6c2
C:1-84
2d
d1xw6d2
D:1-84
[
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CATH Domains
(2, 8)
Info
all CATH domains
1a: CATH_1xw6A01 (A:1-85,A:191-217)
1b: CATH_1xw6B01 (B:1-85,B:191-217)
1c: CATH_1xw6C01 (C:1-85,C:191-217)
1d: CATH_1xw6D01 (D:1-85,D:191-217)
2a: CATH_1xw6A02 (A:86-190)
2b: CATH_1xw6B02 (B:86-190)
2c: CATH_1xw6C02 (C:86-190)
2d: CATH_1xw6D02 (D:86-190)
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)
(
)
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(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Glutaredoxin
(620)
Homologous Superfamily
:
Glutaredoxin
(617)
Human (Homo sapiens)
(186)
1a
1xw6A01
A:1-85,A:191-217
1b
1xw6B01
B:1-85,B:191-217
1c
1xw6C01
C:1-85,C:191-217
1d
1xw6D01
D:1-85,D:191-217
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2
(267)
Homologous Superfamily
:
[code=1.20.1050.10, no name defined]
(249)
Human (Homo sapiens)
(119)
2a
1xw6A02
A:86-190
2b
1xw6B02
B:86-190
2c
1xw6C02
C:86-190
2d
1xw6D02
D:86-190
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Asym.Unit (167 KB)
Header - Asym.Unit
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