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1XW5
Asym. Unit
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Asym.Unit (88 KB)
Biol.Unit 1 (84 KB)
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(1)
Title
:
HUMAN GLUTATHIONE S-TRANSFERASE M2-2 (E.C.2.5.1.18) COMPLEXED WITH GLUTATHIONE, MONOCLINIC CRYSTAL FORM
Authors
:
L. N. Patskovska, Y. V. Patskovsky, S. C. Almo, I. Listowsky
Date
:
29 Oct 04 (Deposition) - 30 Nov 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Transferase, Glutathione, Conjugation, Detoxification, Cytosolic, Dimer, Active Site
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Patskovsky, L. N. Patskovska, S. C. Almo, I. Listowsky
Structural Perturbation Of The Active Site Of Human Glutathione-S-Transferase M2-2 Upon Ligand Binding
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: GLUTATHIONE (GSHa)
1b: GLUTATHIONE (GSHb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GSH
2
Ligand/Ion
GLUTATHIONE
[
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
TYR A:6 , TRP A:7 , LEU A:12 , ARG A:42 , TRP A:45 , LYS A:49 , ASN A:58 , LEU A:59 , PRO A:60 , GLN A:71 , SER A:72 , HOH A:482 , HOH A:533 , HOH A:548 , HOH A:558 , HOH A:575 , HOH A:693 , ASP B:105
BINDING SITE FOR RESIDUE GSH A 471
2
AC2
SOFTWARE
ASP A:105 , TYR B:6 , TRP B:7 , LEU B:12 , ARG B:42 , TRP B:45 , LYS B:49 , ASN B:58 , LEU B:59 , PRO B:60 , GLN B:71 , SER B:72 , HOH B:477 , HOH B:492 , HOH B:504 , HOH B:623 , HOH B:664 , HOH B:665 , HOH B:667
BINDING SITE FOR RESIDUE GSH B 472
[
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SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_049486 (S172N, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_049486
S
173
N
GSTM2_HUMAN
Polymorphism
2229050
A/B
S
172
N
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: GST_CTER (A:89-207,B:89-207)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GST_CTER
PS50405
Soluble glutathione S-transferase C-terminal domain profile.
GSTM2_HUMAN
90-208
2
A:89-207
B:89-207
[
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Exons
(8, 16)
Info
All Exons
Exon 1.1j (A:1-11 | B:1-11)
Exon 1.2b (A:12-37 | B:12-37)
Exon 1.2d (A:37-58 | B:37-58)
Exon 1.3b (A:59-86 | B:59-86)
Exon 1.4a (A:86-119 | B:86-119)
Exon 1.6b (A:120-151 | B:120-151)
Exon 1.7b (A:152-188 | B:152-188)
Exon 1.9e (A:189-217 | B:189-217)
View:
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All Exon Boundaries
1: Boundary -/1.1j
2: Boundary 1.1j/1.2b
3: Boundary 1.2b/1.2d
4: Boundary 1.2d/1.3b
5: Boundary 1.3b/1.4a
6: Boundary 1.4a/1.6b
7: Boundary 1.6b/1.7b
8: Boundary 1.7b/1.9e
9: Boundary 1.9e/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1j
ENST00000241337
1j
ENSE00001898781
chr1:
110210724-110210773
50
GSTM2_HUMAN
1-12
12
2
A:1-11
B:1-11
11
11
1.2b
ENST00000241337
2b
ENSE00001732758
chr1:
110211047-110211122
76
GSTM2_HUMAN
13-38
26
2
A:12-37
B:12-37
26
26
1.2d
ENST00000241337
2d
ENSE00001662058
chr1:
110211547-110211611
65
GSTM2_HUMAN
38-59
22
2
A:37-58
B:37-58
22
22
1.3b
ENST00000241337
3b
ENSE00001605407
chr1:
110211912-110211993
82
GSTM2_HUMAN
60-87
28
2
A:59-86
B:59-86
28
28
1.4a
ENST00000241337
4a
ENSE00001630516
chr1:
110212093-110212193
101
GSTM2_HUMAN
87-120
34
2
A:86-119
B:86-119
34
34
1.6b
ENST00000241337
6b
ENSE00001681310
chr1:
110213909-110214004
96
GSTM2_HUMAN
121-152
32
2
A:120-151
B:120-151
32
32
1.7b
ENST00000241337
7b
ENSE00001746057
chr1:
110214095-110214205
111
GSTM2_HUMAN
153-189
37
2
A:152-188
B:152-188
37
37
1.9e
ENST00000241337
9e
ENSE00001826241
chr1:
110217369-110217908
540
GSTM2_HUMAN
190-218
29
2
A:189-217
B:189-217
29
29
[
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SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1xw5a1 (A:85-217)
1b: SCOP_d1xw5b1 (B:85-217)
2a: SCOP_d1xw5a2 (A:1-84)
2b: SCOP_d1xw5b2 (B:1-84)
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Protein Domains
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Organisms
(
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Class
:
All alpha proteins
(14657)
Fold
:
GST C-terminal domain-like
(353)
Superfamily
:
GST C-terminal domain-like
(353)
Family
:
Glutathione S-transferase (GST), C-terminal domain
(263)
Protein domain
:
Class mu GST
(33)
Human (Homo sapiens) [TaxId: 9606]
(15)
1a
d1xw5a1
A:85-217
1b
d1xw5b1
B:85-217
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Thioredoxin fold
(994)
Superfamily
:
Thioredoxin-like
(992)
Family
:
Glutathione S-transferase (GST), N-terminal domain
(216)
Protein domain
:
Class mu GST
(33)
Human (Homo sapiens) [TaxId: 9606]
(15)
2a
d1xw5a2
A:1-84
2b
d1xw5b2
B:1-84
[
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1xw5A01 (A:1-85,A:191-217)
1b: CATH_1xw5B01 (B:1-85,B:191-217)
2a: CATH_1xw5A02 (A:86-190)
2b: CATH_1xw5B02 (B:86-190)
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Organisms
(
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(
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Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Glutaredoxin
(620)
Homologous Superfamily
:
Glutaredoxin
(617)
Human (Homo sapiens)
(186)
1a
1xw5A01
A:1-85,A:191-217
1b
1xw5B01
B:1-85,B:191-217
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2
(267)
Homologous Superfamily
:
[code=1.20.1050.10, no name defined]
(249)
Human (Homo sapiens)
(119)
2a
1xw5A02
A:86-190
2b
1xw5B02
B:86-190
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Asymmetric Unit 1
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