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1XVQ
Asym. Unit
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Asym.Unit (32 KB)
Biol.Unit 1 (28 KB)
Biol.Unit 2 (54 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THIOL PEROXIDASE FROM MYCOBACTERIUM TUBERCULOSIS
Authors
:
B. S. Rho, J. D. Pedelacq, L. W. Hung, J. M. Holton, D. Vigil, S. I. Kim, M. S T. C. Terwilliger, Tb Structural Genomics Consortium (Tbsgc)
Date
:
28 Oct 04 (Deposition) - 07 Dec 04 (Release) - 16 Nov 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.75
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Biol. Unit 2: A (2x)
Keywords
:
Thioredoxin Fold, Structural Genomics, Psi, Protein Structure Initiative, Tb Structural Genomics Consortium, Tbsgc, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. S. Rho, L. W. Hung, J. M. Holton, D. Vigil, S. I. Kim, M. S. Park, T. C. Terwilliger, J. D. Pedelacq
Functional And Structural Characterization Of A Thiol Peroxidase From Mycobacterium Tuberculosis.
J. Mol. Biol. V. 361 850 2006
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Hetero Components
(3, 6)
Info
All Hetero Components
1a: S-OXY CYSTEINE (CSXa)
2a: AMMONIUM ION (NH4a)
2b: AMMONIUM ION (NH4b)
3a: YTTRIUM (III) ION (YT3a)
3b: YTTRIUM (III) ION (YT3b)
3c: YTTRIUM (III) ION (YT3c)
View:
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No.
Name
Count
Type
Full Name
1
CSX
1
Mod. Amino Acid
S-OXY CYSTEINE
2
NH4
2
Ligand/Ion
AMMONIUM ION
3
YT3
3
Ligand/Ion
YTTRIUM (III) ION
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLU A:16 , GLU A:149 , YT3 A:203 , HOH A:470
BINDING SITE FOR RESIDUE YT3 A 201
2
AC2
SOFTWARE
ASP A:40
BINDING SITE FOR RESIDUE YT3 A 202
3
AC3
SOFTWARE
GLU A:16 , GLU A:149 , YT3 A:201 , HOH A:548
BINDING SITE FOR RESIDUE YT3 A 203
4
AC4
SOFTWARE
ASP A:56 , ALA A:88
BINDING SITE FOR RESIDUE NH4 A 301
5
AC5
SOFTWARE
HOH A:509
BINDING SITE FOR RESIDUE NH4 A 302
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: THIOREDOXIN_2 (A:18-165,A:18-165)
2: TPX (A:82-93,A:82-93)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
THIOREDOXIN_2
PS51352
Thioredoxin domain profile.
TPX_MYCTO
18-165
1
A:18-165
TPX_MYCTU
18-165
1
A:18-165
2
TPX
PS01265
Tpx family signature.
TPX_MYCTO
82-93
1
A:82-93
TPX_MYCTU
82-93
1
A:82-93
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1xvqa_ (A:)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Thioredoxin fold
(994)
Superfamily
:
Thioredoxin-like
(992)
Family
:
Glutathione peroxidase-like
(136)
Protein domain
:
Thiol peroxidase Tpx
(8)
Mycobacterium tuberculosis [TaxId: 1773]
(2)
1a
d1xvqa_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1xvqA00 (A:2-167)
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Organisms
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Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Glutaredoxin
(620)
Homologous Superfamily
:
Glutaredoxin
(617)
Mycobacterium tuberculosis. Organism_taxid: 1773.
(6)
1a
1xvqA00
A:2-167
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Redoxin_1xvqA01 (A:19-160)
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Clans
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)
Organisms
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)
(
)
Clan
:
Thioredoxin
(367)
Family
:
Redoxin
(27)
Mycobacterium tuberculosis
(3)
1a
Redoxin-1xvqA01
A:19-160
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Asymmetric Unit 1
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Asym.Unit (32 KB)
Header - Asym.Unit
Biol.Unit 1 (28 KB)
Header - Biol.Unit 1
Biol.Unit 2 (54 KB)
Header - Biol.Unit 2
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