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1XVP
Biol. Unit 4
Info
Asym.Unit (175 KB)
Biol.Unit 1 (85 KB)
Biol.Unit 2 (87 KB)
Biol.Unit 3 (168 KB)
Biol.Unit 4 (164 KB)
Biol.Unit 5 (83 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF CAR/RXR HETERODIMER BOUND WITH SRC1 PEPTIDE, FATTY ACID AND CITCO
Authors
:
R. X. Xu, M. H. Lambert, B. B. Wisely, E. N. Warren, E. E. Weinert, G. M. Wai J. D. Williams, L. B. Moore, T. M. Willson, J. T. Moore
Date
:
28 Oct 04 (Deposition) - 28 Dec 04 (Release) - 30 Nov 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,E,F (1x)
Biol. Unit 2: C,D,G,H (1x)
Biol. Unit 3: A,B,C,D,E,F,G,H (1x)
Biol. Unit 4: A,B,C,D,E,G (1x)
Biol. Unit 5: A,C,E,G (1x)
Keywords
:
Car, Rxr, Citco, Src1, Dna Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. X. Xu, M. H. Lambert, B. B. Wisely, E. N. Warren, E. E. Weinert, G. M. Waitt, J. D. Williams, J. L. Collins, L. B. Moore, T. M. Willson, J. T. Moore
A Structural Basis For Constitutive Activity In The Human Car/Rxralpha Heterodimer.
Mol. Cell V. 16 919 2004
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Hetero Components
(2, 3)
Info
All Hetero Components
1a: 6-(4-CHLOROPHENYL)IMIDAZO[2,1-B][1... (CIDa)
2a: PENTADECANOIC ACID (F15a)
2b: PENTADECANOIC ACID (F15b)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CID
1
Ligand/Ion
6-(4-CHLOROPHENYL)IMIDAZO[2,1-B][1,3]THIAZOLE-5-CARBALDEHYDE O-(3,4-DICHLOROBENZYL)OXIME
2
F15
2
Ligand/Ion
PENTADECANOIC ACID
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ILE C:268 , ALA C:272 , GLN C:275 , PHE C:313 , ARG C:316 , LEU C:326 , ALA C:327 , ILE C:345 , CYS C:432
BINDING SITE FOR RESIDUE F15 C 1001
2
AC2
SOFTWARE
ALA A:272 , GLN A:275 , PHE A:313 , ARG A:316 , ALA A:327 , ILE A:345 , CYS A:432
BINDING SITE FOR RESIDUE F15 A 1002
3
AC3
SOFTWARE
PHE D:161 , ASN D:165 , MET D:168 , VAL D:199 , HIS D:203 , LEU D:206 , PHE D:217 , TYR D:224 , THR D:225 , ASP D:228 , GLY D:229 , LEU D:239 , LEU D:242 , PHE D:243 , TYR D:326
BINDING SITE FOR RESIDUE CID D 1003
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SAPs(SNPs)/Variants
(6, 11)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_018344 (V133G, chain B/D, )
2: VAR_014620 (P261L, chain A/C, )
3: VAR_050582 (A327S, chain A/C, )
4: VAR_014621 (S336I, chain A/C, )
5: VAR_050583 (A398V, chain A/C, )
6: VAR_019772 (E685A, chain G/G, )
View:
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_018344
V
133
G
NR1I3_HUMAN
Polymorphism
---
B/D
V
133
G
2
UniProt
VAR_014620
P
261
L
RXRA_HUMAN
Polymorphism
2234960
A/C
P
261
L
3
UniProt
VAR_050582
A
327
S
RXRA_HUMAN
Polymorphism
1805345
A/C
A
327
S
4
UniProt
VAR_014621
S
336
I
RXRA_HUMAN
Polymorphism
1805345
A/C
S
336
I
5
UniProt
VAR_050583
A
398
V
RXRA_HUMAN
Polymorphism
11542209
A/C
A
398
V
6
UniProt
VAR_019772
E
685
A
NCOA1_HUMAN
Polymorphism
1049021
G
G
E
628
685
A
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1xvpb_ (B:)
1b: SCOP_d1xvpd_ (D:)
2a: SCOP_d1xvpa_ (A:)
2b: SCOP_d1xvpc_ (C:)
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Protein Domains
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Class
:
All alpha proteins
(14657)
Fold
:
Nuclear receptor ligand-binding domain
(609)
Superfamily
:
Nuclear receptor ligand-binding domain
(609)
Family
:
Nuclear receptor ligand-binding domain
(598)
Protein domain
:
Orphan nuclear receptor NR1I3 (CAR)
(4)
Human (Homo sapiens) [TaxId: 9606]
(2)
1a
d1xvpb_
B:
1b
d1xvpd_
D:
Protein domain
:
Retinoid-X receptor alpha (RXR-alpha)
(36)
Human (Homo sapiens) [TaxId: 9606]
(33)
2a
d1xvpa_
A:
2b
d1xvpc_
C:
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1xvpC00 (C:227-462)
1b: CATH_1xvpA00 (A:227-458)
1c: CATH_1xvpB00 (B:103-348)
1d: CATH_1xvpD00 (D:103-348)
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)
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)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Retinoid X Receptor
(409)
Homologous Superfamily
:
Retinoid X Receptor
(409)
Human (Homo sapiens)
(337)
1a
1xvpC00
C:227-462
1b
1xvpA00
A:227-458
1c
1xvpB00
B:103-348
1d
1xvpD00
D:103-348
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_Hormone_recep_1xvpD01 (D:154-342)
1b: PFAM_Hormone_recep_1xvpD02 (D:154-342)
1c: PFAM_Hormone_recep_1xvpC01 (C:251-442)
1d: PFAM_Hormone_recep_1xvpC02 (C:251-442)
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Clan
:
no clan defined [family: Hormone_recep]
(290)
Family
:
Hormone_recep
(290)
Homo sapiens (Human)
(244)
1a
Hormone_recep-1xvpD01
D:154-342
1b
Hormone_recep-1xvpD02
D:154-342
1c
Hormone_recep-1xvpC01
C:251-442
1d
Hormone_recep-1xvpC02
C:251-442
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Asymmetric Unit 1
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Asym.Unit (175 KB)
Header - Asym.Unit
Biol.Unit 1 (85 KB)
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Biol.Unit 3 (168 KB)
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Biol.Unit 4 (164 KB)
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Biol.Unit 5 (83 KB)
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