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1XVG
Asym. Unit
Info
Asym.Unit (381 KB)
Biol.Unit 1 (373 KB)
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(1)
Title
:
SOLUBLE METHANE MONOOXYGENASE HYDROXYLASE: BROMOETHANOL SOAKED STRUCTURE
Authors
:
M. H. Sazinsky, S. J. Lippard
Date
:
27 Oct 04 (Deposition) - 03 May 05 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.96
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F (1x)
Keywords
:
Methane, Diiron, Product Binding, Cavities, Four-Helix Bundle, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. H. Sazinsky, S. J. Lippard
Product Bound Structures Of The Soluble Methane Monooxygenase Hydroxylase From Methylococcus Capsulatus (Bath): Protein Motion In The Alpha-Subunit
J. Am. Chem. Soc. V. 127 5814 2005
[
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Hetero Components
(3, 20)
Info
All Hetero Components
1a: 2-BROMOETHANOL (BRJa)
1b: 2-BROMOETHANOL (BRJb)
1c: 2-BROMOETHANOL (BRJc)
1d: 2-BROMOETHANOL (BRJd)
1e: 2-BROMOETHANOL (BRJe)
1f: 2-BROMOETHANOL (BRJf)
1g: 2-BROMOETHANOL (BRJg)
1h: 2-BROMOETHANOL (BRJh)
1i: 2-BROMOETHANOL (BRJi)
1j: 2-BROMOETHANOL (BRJj)
1k: 2-BROMOETHANOL (BRJk)
1l: 2-BROMOETHANOL (BRJl)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
2d: CALCIUM ION (CAd)
3a: FE (III) ION (FEa)
3b: FE (III) ION (FEb)
3c: FE (III) ION (FEc)
3d: FE (III) ION (FEd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BRJ
12
Ligand/Ion
2-BROMOETHANOL
2
CA
4
Ligand/Ion
CALCIUM ION
3
FE
4
Ligand/Ion
FE (III) ION
[
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Sites
(20, 20)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:114 , GLU A:144 , HIS A:147 , FE A:529 , BRJ A:3803 , HOH A:4001 , HOH A:4099
BINDING SITE FOR RESIDUE FE A 528
02
AC2
SOFTWARE
GLN A:140 , GLU A:144 , GLU A:209 , GLU A:243 , HIS A:246 , FE A:528 , BRJ A:3803 , HOH A:4099
BINDING SITE FOR RESIDUE FE A 529
03
AC3
SOFTWARE
GLU B:114 , GLU B:144 , HIS B:147 , FE B:529 , BRJ B:3800 , HOH B:3816 , HOH B:3882
BINDING SITE FOR RESIDUE FE B 528
04
AC4
SOFTWARE
GLU B:144 , GLU B:209 , GLU B:243 , HIS B:246 , FE B:528 , BRJ B:3800 , HOH B:3816
BINDING SITE FOR RESIDUE FE B 529
05
AC5
SOFTWARE
GLU C:222 , HOH C:3818 , HOH C:3821 , HOH C:4022 , HOH C:4031 , HOH C:4077
BINDING SITE FOR RESIDUE CA C 1111
06
AC6
SOFTWARE
ASP C:348 , HOH C:4056 , HOH C:4057
BINDING SITE FOR RESIDUE CA C 1112
07
AC7
SOFTWARE
ASN A:527 , HOH A:3856 , HOH A:4029 , HOH A:4112 , SER B:428
BINDING SITE FOR RESIDUE CA A 1162
08
AC8
SOFTWARE
ASP C:376 , ASP C:378 , HOH C:4084
BINDING SITE FOR RESIDUE CA C 1218
09
AC9
SOFTWARE
LEU B:110 , GLU B:114 , ALA B:117 , GLU B:144 , PHE B:192 , GLU B:209 , FE B:528 , FE B:529 , HOH B:3816 , HOH B:4086
BINDING SITE FOR RESIDUE BRJ B 3800
10
BC1
SOFTWARE
VAL B:106 , MET B:184 , VAL B:285
BINDING SITE FOR RESIDUE BRJ B 3801
11
BC2
SOFTWARE
THR B:102 , MET B:288 , GLY B:293 , TYR B:347 , LEU B:361
BINDING SITE FOR RESIDUE BRJ B 3802
12
BC3
SOFTWARE
LEU A:110 , GLU A:114 , ALA A:117 , GLU A:144 , GLU A:209 , FE A:528 , FE A:529 , HOH A:4001 , HOH A:4099 , HOH A:4114
BINDING SITE FOR RESIDUE BRJ A 3803
13
BC4
SOFTWARE
VAL A:106 , LEU A:110 , LEU A:216
BINDING SITE FOR RESIDUE BRJ A 3804
14
BC5
SOFTWARE
LYS A:98 , THR A:102 , LEU A:289 , GLY A:293 , LEU A:361
BINDING SITE FOR RESIDUE BRJ A 3805
15
BC6
SOFTWARE
ILE A:63 , ALA A:64 , TYR A:67 , ASN A:135 , ALA A:139 , ILE C:187 , GLN C:191
BINDING SITE FOR RESIDUE BRJ A 3806
16
BC7
SOFTWARE
GLU C:116 , ASN C:282 , GLN C:283 , THR C:286 , TYR D:119
BINDING SITE FOR RESIDUE BRJ C 3807
17
BC8
SOFTWARE
TYR C:119 , GLU D:116 , THR D:286 , TYR D:287
BINDING SITE FOR RESIDUE BRJ C 3808
18
BC9
SOFTWARE
LEU B:62 , ILE B:63 , ALA B:64 , TYR B:67 , ASN B:135 , ALA B:139 , GLN D:191
BINDING SITE FOR RESIDUE BRJ B 3809
19
CC1
SOFTWARE
GLN C:293 , HOH C:3816 , ARG D:122
BINDING SITE FOR RESIDUE BRJ C 3810
20
CC2
SOFTWARE
ARG C:122 , GLY C:126 , ILE D:290 , GLN D:293
BINDING SITE FOR RESIDUE BRJ C 3811
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(0, 0)
Info
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(3, 6)
Info
All SCOP Domains
1a: SCOP_d1xvga_ (A:)
1b: SCOP_d1xvgb_ (B:)
2a: SCOP_d1xvgc_ (C:)
2b: SCOP_d1xvgd_ (D:)
3a: SCOP_d1xvge_ (E:)
3b: SCOP_d1xvgf_ (F:)
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Protein Domains
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)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Ferritin-like
(533)
Superfamily
:
Ferritin-like
(489)
Family
:
Ribonucleotide reductase-like
(185)
Protein domain
:
Methane monooxygenase hydrolase alpha subunit
(28)
Methylococcus capsulatus [TaxId: 414]
(26)
1a
d1xvga_
A:
1b
d1xvgb_
B:
Protein domain
:
Methane monooxygenase hydrolase beta subunit
(29)
Methylococcus capsulatus [TaxId: 414]
(27)
2a
d1xvgc_
C:
2b
d1xvgd_
D:
Fold
:
Open three-helical up-and-down bundle
(49)
Superfamily
:
Methane monooxygenase hydrolase, gamma subunit
(29)
Family
:
Methane monooxygenase hydrolase, gamma subunit
(29)
Protein domain
:
Methane monooxygenase hydrolase, gamma subunit
(29)
Methylococcus capsulatus [TaxId: 414]
(27)
3a
d1xvge_
E:
3b
d1xvgf_
F:
[
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CATH Domains
(3, 8)
Info
all CATH domains
1a: CATH_1xvgC00 (C:2-389)
1b: CATH_1xvgA00 (A:18-527)
1c: CATH_1xvgB00 (B:18-527)
1d: CATH_1xvgD00 (D:2-389)
2a: CATH_1xvgE01 (E:4-71)
2b: CATH_1xvgF01 (F:4-71)
3a: CATH_1xvgE02 (E:72-144)
3b: CATH_1xvgF02 (F:72-144)
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(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Ribonucleotide Reductase, subunit A
(86)
Homologous Superfamily
:
Ribonucleotide Reductase, subunit A
(86)
Methylococcus capsulatus. Organism_taxid: 414. Methylococcus capsulatus. Organism_taxid: 414.
(22)
1a
1xvgC00
C:2-389
1b
1xvgA00
A:18-527
1c
1xvgB00
B:18-527
1d
1xvgD00
D:2-389
Architecture
:
Up-down Bundle
(3216)
Topology
:
Monooxygenase
(39)
Homologous Superfamily
:
[code=1.20.1280.10, no name defined]
(28)
Methylococcus capsulatus. Organism_taxid: 414. Methylococcus capsulatus. Organism_taxid: 414.
(22)
2a
1xvgE01
E:4-71
2b
1xvgF01
F:4-71
Homologous Superfamily
:
[code=1.20.1280.30, no name defined]
(28)
Methylococcus capsulatus. Organism_taxid: 414. Methylococcus capsulatus. Organism_taxid: 414.
(22)
3a
1xvgE02
E:72-144
3b
1xvgF02
F:72-144
[
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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