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1XVB
Asym. Unit
Info
Asym.Unit (378 KB)
Biol.Unit 1 (371 KB)
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(1)
Title
:
SOLUBLE METHANE MONOOXYGENASE HYDROXYLASE: 6-BROMOHEXANOL SOAKED STRUCTURE
Authors
:
M. H. Sazinsky, S. J. Lippard
Date
:
27 Oct 04 (Deposition) - 03 May 05 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F (1x)
Keywords
:
Methane, Diiron, Cavities, Products, Four-Helix Bundle, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. H. Sazinsky, S. J. Lippard
Product Bound Structures Of The Soluble Methane Monooxygenase Hydroxylase From Methylococcus Capsulatus (Bath): Protein Motion In The Alpha-Subunit
J. Am. Chem. Soc. V. 127 5814 2005
[
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Hetero Components
(6, 19)
Info
All Hetero Components
1a: 1-BROMOPROPANE (3BRa)
1b: 1-BROMOPROPANE (3BRb)
2a: 1-BROMOBUTANE (BBUa)
3a: 1-BROMOETHANE (BBXa)
4a: 6-BROMOHEXAN-1-OL (BHLa)
4b: 6-BROMOHEXAN-1-OL (BHLb)
4c: 6-BROMOHEXAN-1-OL (BHLc)
4d: 6-BROMOHEXAN-1-OL (BHLd)
4e: 6-BROMOHEXAN-1-OL (BHLe)
4f: 6-BROMOHEXAN-1-OL (BHLf)
4g: 6-BROMOHEXAN-1-OL (BHLg)
4h: 6-BROMOHEXAN-1-OL (BHLh)
4i: 6-BROMOHEXAN-1-OL (BHLi)
4j: 6-BROMOHEXAN-1-OL (BHLj)
5a: CALCIUM ION (CAa)
6a: FE (III) ION (FEa)
6b: FE (III) ION (FEb)
6c: FE (III) ION (FEc)
6d: FE (III) ION (FEd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
3BR
2
Ligand/Ion
1-BROMOPROPANE
2
BBU
1
Ligand/Ion
1-BROMOBUTANE
3
BBX
1
Ligand/Ion
1-BROMOETHANE
4
BHL
10
Ligand/Ion
6-BROMOHEXAN-1-OL
5
CA
1
Ligand/Ion
CALCIUM ION
6
FE
4
Ligand/Ion
FE (III) ION
[
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Sites
(18, 18)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:144 , GLU A:209 , GLU A:243 , HIS A:246 , FE A:1171 , BHL A:1203 , HOH A:1309
BINDING SITE FOR RESIDUE FE A 1170
02
AC2
SOFTWARE
GLU A:114 , GLU A:144 , HIS A:147 , FE A:1170 , BHL A:1203 , HOH A:1308 , HOH A:1309
BINDING SITE FOR RESIDUE FE A 1171
03
AC3
SOFTWARE
GLU B:144 , GLU B:209 , GLU B:243 , HIS B:246 , FE B:1173 , BHL B:1201 , HOH B:1295
BINDING SITE FOR RESIDUE FE B 1172
04
AC4
SOFTWARE
GLU B:114 , GLU B:144 , HIS B:147 , FE B:1172 , BHL B:1201 , HOH B:1294 , HOH B:1295
BINDING SITE FOR RESIDUE FE B 1173
05
AC5
SOFTWARE
GLU C:222 , HOH C:1296 , HOH C:1306 , HOH C:1374 , HOH C:1375 , HOH C:1456 , HOH E:193
BINDING SITE FOR RESIDUE CA C 1174
06
AC6
SOFTWARE
GLY B:113 , GLU B:114 , ALA B:117 , GLU B:144 , PHE B:188 , PHE B:192 , LEU B:204 , GLY B:208 , GLU B:209 , FE B:1172 , FE B:1173 , HOH B:1295
BINDING SITE FOR RESIDUE BHL B 1201
07
AC7
SOFTWARE
LYS B:98 , GLU B:101 , THR B:102 , LEU B:180 , MET B:288 , GLY B:293 , PHE B:359 , LEU B:361 , HOH B:1314
BINDING SITE FOR RESIDUE BHL B 1202
08
AC8
SOFTWARE
GLU A:114 , GLU A:144 , LEU A:204 , GLY A:208 , GLU A:209 , ILE A:217 , GLU A:243 , FE A:1170 , FE A:1171 , HOH A:1308 , HOH A:1309
BINDING SITE FOR RESIDUE BHL A 1203
09
AC9
SOFTWARE
MET B:184 , PHE B:212 , LEU B:216 , GLN B:278 , TYR B:281 , PHE B:282
BINDING SITE FOR RESIDUE BHL B 1205
10
BC1
SOFTWARE
LYS A:98 , GLU A:101 , THR A:102 , LEU A:180 , LEU A:289 , GLY A:293 , PHE A:359 , LEU A:361 , HOH A:1361
BINDING SITE FOR RESIDUE BHL A 1206
11
BC2
SOFTWARE
VAL A:106 , PHE A:188 , LEU A:216 , TYR A:281 , PHE A:282 , LEU A:289 , HOH A:1449
BINDING SITE FOR RESIDUE BHL A 1207
12
BC3
SOFTWARE
GLN C:293 , GLN D:125
BINDING SITE FOR RESIDUE 3BR C 1208
13
BC4
SOFTWARE
SER A:490 , ASP A:491 , LEU C:29 , ASP C:30
BINDING SITE FOR RESIDUE BBU A 1209
14
BC5
SOFTWARE
LEU A:405 , PHE A:519 , BHL A:1210
BINDING SITE FOR RESIDUE BHL A 1200
15
BC6
SOFTWARE
LEU A:405 , PHE A:408 , HIS A:413 , ILE A:415 , PHE A:519 , BHL A:1200
BINDING SITE FOR RESIDUE BHL A 1210
16
BC7
SOFTWARE
SER B:490 , ASP B:491 , GLY B:503 , LEU B:506 , LEU D:29 , HOH D:514
BINDING SITE FOR RESIDUE BHL B 1211
17
BC8
SOFTWARE
ILE B:409 , HIS B:413 , PRO B:414 , ILE B:415 , PHE B:519 , HOH B:1226
BINDING SITE FOR RESIDUE BHL B 1212
18
BC9
SOFTWARE
ARG C:122 , GLN C:125 , GLN D:293
BINDING SITE FOR RESIDUE 3BR C 1213
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(0, 0)
Info
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(3, 6)
Info
All SCOP Domains
1a: SCOP_d1xvba_ (A:)
1b: SCOP_d1xvbb_ (B:)
2a: SCOP_d1xvbc_ (C:)
2b: SCOP_d1xvbd_ (D:)
3a: SCOP_d1xvbe_ (E:)
3b: SCOP_d1xvbf_ (F:)
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Protein Domains
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(
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Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Ferritin-like
(533)
Superfamily
:
Ferritin-like
(489)
Family
:
Ribonucleotide reductase-like
(185)
Protein domain
:
Methane monooxygenase hydrolase alpha subunit
(28)
Methylococcus capsulatus [TaxId: 414]
(26)
1a
d1xvba_
A:
1b
d1xvbb_
B:
Protein domain
:
Methane monooxygenase hydrolase beta subunit
(29)
Methylococcus capsulatus [TaxId: 414]
(27)
2a
d1xvbc_
C:
2b
d1xvbd_
D:
Fold
:
Open three-helical up-and-down bundle
(49)
Superfamily
:
Methane monooxygenase hydrolase, gamma subunit
(29)
Family
:
Methane monooxygenase hydrolase, gamma subunit
(29)
Protein domain
:
Methane monooxygenase hydrolase, gamma subunit
(29)
Methylococcus capsulatus [TaxId: 414]
(27)
3a
d1xvbe_
E:
3b
d1xvbf_
F:
[
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CATH Domains
(3, 8)
Info
all CATH domains
1a: CATH_1xvbC00 (C:2-389)
1b: CATH_1xvbD00 (D:2-389)
1c: CATH_1xvbA00 (A:18-527)
1d: CATH_1xvbB00 (B:18-527)
2a: CATH_1xvbE01 (E:4-71)
2b: CATH_1xvbF01 (F:4-71)
3a: CATH_1xvbE02 (E:72-144)
3b: CATH_1xvbF02 (F:72-144)
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(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Ribonucleotide Reductase, subunit A
(86)
Homologous Superfamily
:
Ribonucleotide Reductase, subunit A
(86)
Methylococcus capsulatus. Organism_taxid: 414. Methylococcus capsulatus. Organism_taxid: 414.
(22)
1a
1xvbC00
C:2-389
1b
1xvbD00
D:2-389
1c
1xvbA00
A:18-527
1d
1xvbB00
B:18-527
Architecture
:
Up-down Bundle
(3216)
Topology
:
Monooxygenase
(39)
Homologous Superfamily
:
[code=1.20.1280.10, no name defined]
(28)
Methylococcus capsulatus. Organism_taxid: 414. Methylococcus capsulatus. Organism_taxid: 414.
(22)
2a
1xvbE01
E:4-71
2b
1xvbF01
F:4-71
Homologous Superfamily
:
[code=1.20.1280.30, no name defined]
(28)
Methylococcus capsulatus. Organism_taxid: 414. Methylococcus capsulatus. Organism_taxid: 414.
(22)
3a
1xvbE02
E:72-144
3b
1xvbF02
F:72-144
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Asymmetric Unit 1
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