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1XU2
Asym. Unit
Info
Asym.Unit (91 KB)
Biol.Unit 1 (85 KB)
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(1)
Title
:
THE CRYSTAL STRUCTURE OF APRIL BOUND TO BCMA
Authors
:
S. G. Hymowitz, D. R. Patel, H. J. A. Wallweber, S. Runyon, M. Yan, J. Yin, S. K. Shriver, N. C. Gordon, B. Pan, N. J. Skelton, R. F. Kelley, M. A. Sta
Date
:
25 Oct 04 (Deposition) - 09 Nov 04 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.35
Chains
:
Asym. Unit : A,B,D,R,S,T
Biol. Unit 1: A,B,D,R,S,T (1x)
Keywords
:
Tnfsf, Cytokine, Crd, Receptor, Jelly-Roll, Cysteine-Rich, Hormone- Growth Factor Receptor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. G. Hymowitz, D. R. Patel, H. J. A. Wallweber, S. Runyon, M. Yan, J. Yin S. K. Shriver, N. C. Gordon, B. Pan, N. J. Skelton, R. F. Kelley, M. A. Starovasnik
Structures Of April-Receptor Complexes: Like Bcma, Taci Employs Only A Single Cysteine-Rich Domain For High-Affinit Ligand Binding
J. Biol. Chem. V. 280 7218 2005
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: NICKEL (II) ION (NIa)
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Label:
No.
Name
Count
Type
Full Name
1
NI
1
Ligand/Ion
NICKEL (II) ION
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:106 , HIS B:106 , HIS D:106
BINDING SITE FOR RESIDUE NI B 301
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 6)
Info
All PROSITE Patterns/Profiles
1: TNF_2 (A:108-241,B:108-241,D:108-241)
2: TNF_1 (A:146-162,B:146-162,D:146-162)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TNF_2
PS50049
TNF family profile.
TNF13_MOUSE
108-241
3
A:108-241
B:108-241
D:108-241
2
TNF_1
PS00251
TNF family signature.
TNF13_MOUSE
146-162
3
A:146-162
B:146-162
D:146-162
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Exons
(1, 3)
Info
All Exons
Exon 1.1 (R:8-43 | S:6-42 | T:8-42)
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/1.2
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000053243
1
ENSE00000829755
chr16:
12058964-12059311
348
TNR17_HUMAN
1-44
44
3
R:8-43
S:6-42
T:8-42
36
37
35
1.2
ENST00000053243
2
ENSE00000668477
chr16:
12060052-12060198
147
TNR17_HUMAN
44-93
50
0
-
-
1.4
ENST00000053243
4
ENSE00001722330
chr16:
12061427-12061925
499
TNR17_HUMAN
93-184
92
0
-
-
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SCOP Domains
(2, 6)
Info
All SCOP Domains
1a: SCOP_d1xu2a_ (A:)
1b: SCOP_d1xu2b_ (B:)
1c: SCOP_d1xu2d_ (D:)
2a: SCOP_d1xu2r_ (R:)
2b: SCOP_d1xu2s_ (S:)
2c: SCOP_d1xu2t_ (T:)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
TNF-like
(100)
Superfamily
:
TNF-like
(100)
Family
:
TNF-like
(82)
Protein domain
:
A proliferation-inducing ligand, APRIL
(5)
Mouse (Mus musculus) [TaxId: 10090]
(5)
1a
d1xu2a_
A:
1b
d1xu2b_
B:
1c
d1xu2d_
D:
Class
:
Small proteins
(3458)
Fold
:
TNF receptor-like
(25)
Superfamily
:
TNF receptor-like
(25)
Family
:
BAFF receptor-like
(7)
Protein domain
:
Tumor necrosis factor receptor superfamily member 17, BCMA
(2)
Human (Homo sapiens) [TaxId: 9606]
(2)
2a
d1xu2r_
R:
2b
d1xu2s_
S:
2c
d1xu2t_
T:
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CATH Domains
(1, 3)
Info
all CATH domains
1a: CATH_1xu2A00 (A:105-241)
1b: CATH_1xu2B00 (B:105-241)
1c: CATH_1xu2D00 (D:105-241)
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)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Jelly Rolls
(1293)
Homologous Superfamily
:
[code=2.60.120.40, no name defined]
(56)
House mouse (Mus musculus)
(14)
1a
1xu2A00
A:105-241
1b
1xu2B00
B:105-241
1c
1xu2D00
D:105-241
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Pfam Domains
(2, 6)
Info
all PFAM domains
1a: PFAM_TNF_1xu2D01 (D:129-241)
1b: PFAM_TNF_1xu2D02 (D:129-241)
1c: PFAM_TNF_1xu2D03 (D:129-241)
2a: PFAM_BCMA_Tall_bind_1xu2T01 (T:8-42)
2b: PFAM_BCMA_Tall_bind_1xu2T02 (T:8-42)
2c: PFAM_BCMA_Tall_bind_1xu2T03 (T:8-42)
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Clans
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)
Clan
:
C1q_TNF
(45)
Family
:
TNF
(37)
Mus musculus (Mouse)
(11)
1a
TNF-1xu2D01
D:129-241
1b
TNF-1xu2D02
D:129-241
1c
TNF-1xu2D03
D:129-241
Clan
:
no clan defined [family: BCMA-Tall_bind]
(3)
Family
:
BCMA-Tall_bind
(3)
Homo sapiens (Human)
(3)
2a
BCMA-Tall_bind-1xu2T01
T:8-42
2b
BCMA-Tall_bind-1xu2T02
T:8-42
2c
BCMA-Tall_bind-1xu2T03
T:8-42
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Asymmetric Unit 1
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Asym.Unit (91 KB)
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