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1XTR
Asym. Unit
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Asym.Unit (35 KB)
Biol.Unit 1 (31 KB)
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(1)
Title
:
STRUCTURE OF SMALL GTPASE HUMAN RHEB IN COMPLEX WITH GPPNHP
Authors
:
Y. Yu, J. Ding
Date
:
24 Oct 04 (Deposition) - 08 Mar 05 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.65
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Beta Saddle, P-Loop, Signaling Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Yu, S. Li, X. Xu, Y. Li, K. Guan, E. Arnold, J. Ding
Structural Basis For The Unique Biological Function Of Smal Gtpase Rheb
J. Biol. Chem. V. 280 17093 2005
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Hetero Components
(3, 3)
Info
All Hetero Components
1a: PHOSPHOAMINOPHOSPHONIC ACID-GUANYL... (GNPa)
2a: GLYCEROL (GOLa)
3a: MAGNESIUM ION (MGa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GNP
1
Ligand/Ion
PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER
2
GOL
1
Ligand/Ion
GLYCEROL
3
MG
1
Ligand/Ion
MAGNESIUM ION
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
SER A:20 , THR A:38 , ASP A:60 , GNP A:179 , HOH A:181 , HOH A:182
BINDING SITE FOR RESIDUE MG A 178
2
AC2
SOFTWARE
ARG A:15 , SER A:16 , VAL A:17 , GLY A:18 , LYS A:19 , SER A:20 , SER A:21 , PHE A:31 , VAL A:32 , ASP A:33 , TYR A:35 , THR A:38 , GLY A:63 , ASN A:119 , LYS A:120 , ASP A:122 , LEU A:123 , SER A:149 , ALA A:150 , MG A:178 , HOH A:182 , HOH A:186
BINDING SITE FOR RESIDUE GNP A 179
3
AC3
SOFTWARE
ALA A:62 , GLY A:63 , GLN A:64 , ILE A:69 , PRO A:71
BINDING SITE FOR RESIDUE GOL A 180
[
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_036310 (E139K, chain A, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_036310
E
139
K
RHEB_HUMAN
Unclassified
---
A
E
139
K
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: RAS (A:2-169)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RAS
PS51421
small GTPase Ras family profile.
RHEB_HUMAN
2-184
1
A:2-169
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Exons
(8, 8)
Info
All Exons
Exon 1.1b (A:2-18)
Exon 1.5 (A:18-42)
Exon 1.6 (A:42-64)
Exon 1.7 (A:65-92)
Exon 1.8c (A:92-111)
Exon 1.8f (A:111-127)
Exon 1.9a (A:127-154)
Exon 1.10d (A:155-171)
View:
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All Exon Boundaries
1: Boundary -/1.1b
2: Boundary 1.1b/1.5
3: Boundary 1.5/1.6
4: Boundary 1.6/1.7
5: Boundary 1.7/1.8c
6: Boundary 1.8c/1.8f
7: Boundary 1.8f/1.9a
8: Boundary 1.9a/1.10d
9: Boundary 1.10d/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000262187
1b
ENSE00001200523
chr7:
151217010-151216546
465
RHEB_HUMAN
1-18
18
1
A:2-18
17
1.5
ENST00000262187
5
ENSE00000730260
chr7:
151188100-151188029
72
RHEB_HUMAN
18-42
25
1
A:18-42
25
1.6
ENST00000262187
6
ENSE00000909920
chr7:
151181890-151181823
68
RHEB_HUMAN
42-64
23
1
A:42-64
23
1.7
ENST00000262187
7
ENSE00000730253
chr7:
151174501-151174419
83
RHEB_HUMAN
65-92
28
1
A:65-92
28
1.8c
ENST00000262187
8c
ENSE00001139595
chr7:
151168691-151168635
57
RHEB_HUMAN
92-111
20
1
A:92-111
20
1.8f
ENST00000262187
8f
ENSE00001200505
chr7:
151168527-151168480
48
RHEB_HUMAN
111-127
17
1
A:111-127
17
1.9a
ENST00000262187
9a
ENSE00001315618
chr7:
151167738-151167657
82
RHEB_HUMAN
127-154
28
1
A:127-154
28
1.10d
ENST00000262187
10d
ENSE00001321653
chr7:
151164297-151163098
1200
RHEB_HUMAN
155-184
30
1
A:155-171
17
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1xtra_ (A:)
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(
)
(
)
Folds
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)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
automated matches
(303)
Protein domain
:
automated matches
(303)
Human (Homo sapiens) [TaxId: 9606]
(86)
1a
d1xtra_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1xtrA00 (A:2-171)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
Human (Homo sapiens)
(413)
1a
1xtrA00
A:2-171
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Ras_1xtrA01 (A:8-169)
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(
)
Clan
:
P-loop_NTPase
(1112)
Family
:
Ras
(176)
Homo sapiens (Human)
(141)
1a
Ras-1xtrA01
A:8-169
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Asymmetric Unit 1
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