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Asym. Unit
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Asym.Unit (69 KB)
Biol.Unit 1 (64 KB)
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(1)
Title
:
STRUCTURE OF HUMAN UAP56 IN COMPLEX WITH ADP
Authors
:
H. Shi, O. Cordin, C. M. Minder, P. Linder, R. -M. Xu
Date
:
22 Oct 04 (Deposition) - 14 Dec 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Alpha-Beta Fold, Gene Regulation
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Shi, O. Cordin, C. M. Minder, P. Linder, R. -M. Xu
Crystal Structure Of The Human Atp-Dependent Splicing And Export Factor Uap56
Proc. Natl. Acad. Sci. Usa V. 101 17628 2004
(for further references see the
PDB file header
)
[
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Hetero Components
(3, 3)
Info
All Hetero Components
1a: ACETIC ACID (ACYa)
2a: ADENOSINE-5'-DIPHOSPHATE (ADPa)
3a: MAGNESIUM ION (MGa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACY
1
Ligand/Ion
ACETIC ACID
2
ADP
1
Ligand/Ion
ADENOSINE-5'-DIPHOSPHATE
3
MG
1
Ligand/Ion
MAGNESIUM ION
[
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
THR A:96 , ASP A:196 , GLU A:197 , ADP A:550
BINDING SITE FOR RESIDUE MG A 501
2
AC2
SOFTWARE
PHE A:47 , PHE A:65 , HIS A:67 , PRO A:68 , GLN A:72 , SER A:91 , GLY A:92 , MET A:93 , GLY A:94 , LYS A:95 , THR A:96 , GLN A:323 , MG A:501 , HOH A:633
BINDING SITE FOR RESIDUE ADP A 550
3
AC3
SOFTWARE
LYS A:162 , LYS A:163 , CYS A:165
BINDING SITE FOR RESIDUE ACY A 500
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: Q_MOTIF (A:45-73)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
Q_MOTIF
PS51195
DEAD-box RNA helicase Q motif profile.
DX39B_HUMAN
45-73
1
A:45-73
[
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Exons
(9, 9)
Info
All Exons
Exon 1.32bf (A:45-71)
Exon 1.33e (A:71-113)
Exon 1.33aa (A:114-144)
Exon 1.34c (A:145-206)
Exon 1.37d (A:206-245)
Exon 1.37an (A:246-289)
Exon 1.37bg (A:290-326)
Exon 1.37bj (A:326-374 (gaps))
Exon 1.37bv (A:375-423)
View:
Select:
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All Exon Boundaries
01: Boundary 1.32m/1.32bf
02: Boundary 1.32bf/1.33e
03: Boundary 1.33e/1.33aa
04: Boundary 1.33aa/1.34c
05: Boundary 1.34c/1.37d
06: Boundary 1.37d/1.37an
07: Boundary 1.37an/1.37bg
08: Boundary 1.37bg/1.37bj
09: Boundary 1.37bj/1.37bv
10: Boundary 1.37bv/1.37ci
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.32m
ENST00000400296
32m
ENSE00001784099
HSCHR6_MHC_QBL:31500503-31500005
499
DX39B_HUMAN
-
0
0
-
-
1.32bf
ENST00000400296
32bf
ENSE00002164347
HSCHR6_MHC_QBL:31498720-31498378
343
DX39B_HUMAN
1-71
71
1
A:45-71
27
1.33e
ENST00000400296
33e
ENSE00001658602
HSCHR6_MHC_QBL:31497332-31497205
128
DX39B_HUMAN
71-113
43
1
A:71-113
43
1.33aa
ENST00000400296
33aa
ENSE00002162097
HSCHR6_MHC_QBL:31496913-31496821
93
DX39B_HUMAN
114-144
31
1
A:114-144
31
1.34c
ENST00000400296
34c
ENSE00002165831
HSCHR6_MHC_QBL:31494743-31494560
184
DX39B_HUMAN
145-206
62
1
A:145-206
62
1.37d
ENST00000400296
37d
ENSE00001739799
HSCHR6_MHC_QBL:31493545-31493427
119
DX39B_HUMAN
206-245
40
1
A:206-245
40
1.37an
ENST00000400296
37an
ENSE00002168082
HSCHR6_MHC_QBL:31490971-31490840
132
DX39B_HUMAN
246-289
44
1
A:246-289
44
1.37bg
ENST00000400296
37bg
ENSE00001650442
HSCHR6_MHC_QBL:31489465-31489356
110
DX39B_HUMAN
290-326
37
1
A:290-326
37
1.37bj
ENST00000400296
37bj
ENSE00001641083
HSCHR6_MHC_QBL:31489257-31489113
145
DX39B_HUMAN
326-374
49
1
A:326-374 (gaps)
49
1.37bv
ENST00000400296
37bv
ENSE00002149622
HSCHR6_MHC_QBL:31488986-31488839
148
DX39B_HUMAN
375-424
50
1
A:375-423
49
1.37ci
ENST00000400296
37ci
ENSE00001612200
HSCHR6_MHC_QBL:31488511-31488280
232
DX39B_HUMAN
424-428
5
0
-
-
[
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]
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1xtja1 (A:46-254)
1b: SCOP_d1xtja2 (A:255-423)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
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)
(
)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
Tandem AAA-ATPase domain
(59)
Protein domain
:
Spliceosome RNA helicase BAT1 (UAP56)
(5)
Human (Homo sapiens) [TaxId: 9606]
(5)
1a
d1xtja1
A:46-254
1b
d1xtja2
A:255-423
[
close SCOP info
]
CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1xtjA01 (A:45-250)
1b: CATH_1xtjA02 (A:263-423)
View:
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(
)
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
Human (Homo sapiens)
(413)
1a
1xtjA01
A:45-250
1b
1xtjA02
A:263-423
[
close CATH info
]
Pfam Domains
(2, 2)
Info
all PFAM domains
1a: PFAM_DEAD_1xtjA01 (A:69-238)
2a: PFAM_Helicase_C_1xtjA02 (A:305-382)
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Clans
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)
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)
(
)
Organisms
(
)
(
)
Clan
:
P-loop_NTPase
(1112)
Family
:
DEAD
(41)
Homo sapiens (Human)
(12)
1a
DEAD-1xtjA01
A:69-238
Family
:
Helicase_C
(51)
Homo sapiens (Human)
(15)
2a
Helicase_C-1xtjA02
A:305-382
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Chain A
Asymmetric Unit 1
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