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1XQH
Biol. Unit 1
Info
Asym.Unit (184 KB)
Biol.Unit 1 (90 KB)
Biol.Unit 2 (90 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A TERNARY COMPLEX OF THE METHYLTRANSFERASE SET9 (ALSO KNOWN AS SET7/9) WITH A P53 PEPTIDE AND SAH
Authors
:
S. Chuikov, J. K. Kurash, J. R. Wilson, B. Xiao, N. Justin, G. S. Ivanov, K. Mckinney, P. Tempst, C. Prives, S. J. Gamblin, N. A. Barlev, D. Reinberg
Date
:
12 Oct 04 (Deposition) - 23 Nov 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.75
Chains
:
Asym. Unit : A,B,E,F
Biol. Unit 1: A,B (1x)
Biol. Unit 2: E,F (1x)
Keywords
:
Set9-P53 Complex, Set-Domain, Lysine Methylation, Transferase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Chuikov, J. K. Kurash, J. R. Wilson, B. Xiao, N. Justin, G. S. Ivanov, K. Mckinney, P. Tempst, C. Prives, S. J. Gamblin, N. A. Barlev, D. Reinberg
Regulation Of P53 Activity Through Lysine Methylation
Nature V. 432 353 2004
(for further references see the
PDB file header
)
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Hetero Components
(2, 2)
Info
All Hetero Components
1a: N-METHYL-LYSINE (MLZa)
1b: N-METHYL-LYSINE (MLZb)
2a: S-ADENOSYL-L-HOMOCYSTEINE (SAHa)
2b: S-ADENOSYL-L-HOMOCYSTEINE (SAHb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
MLZ
1
Mod. Amino Acid
N-METHYL-LYSINE
2
SAH
1
Ligand/Ion
S-ADENOSYL-L-HOMOCYSTEINE
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ALA A:226 , GLU A:228 , ASN A:265 , HIS A:293 , LYS A:294 , ASN A:296 , HIS A:297 , TYR A:335 , TRP A:352 , GLU A:356 , HOH A:1522 , HOH A:1526 , HOH A:1530 , HOH A:1535 , HOH A:1536 , HOH A:1621 , HOH A:1702 , HOH A:1709 , MLZ B:372
BINDING SITE FOR RESIDUE SAH A 1501
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_045569 (K370Q, chain B, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_045569
K
370
Q
P53_HUMAN
Unclassified
---
B
K
370
Q
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: SET (A:214-336)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SET
PS50280
SET domain profile.
SETD7_HUMAN
214-336
1
A:214-336
-
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Exons
(0, 0)
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SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1xqha2 (A:194-366)
1b: SCOP_d1xqhe2 (E:194-366)
2a: SCOP_d1xqha1 (A:117-193)
2b: SCOP_d1xqhe1 (E:117-193)
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Protein Domains
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Class
:
All beta proteins
(24004)
Fold
:
beta-clip
(280)
Superfamily
:
SET domain
(44)
Family
:
Histone lysine methyltransferases
(21)
Protein domain
:
Histone H3 K4-specific methyltransferase SET7/9 catalytic domain
(17)
Human (Homo sapiens) [TaxId: 9606]
(17)
1a
d1xqha2
A:194-366
1b
d1xqhe2
E:194-366
Fold
:
open-sided beta-meander
(34)
Superfamily
:
Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain
(17)
Family
:
Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain
(17)
Protein domain
:
Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain
(17)
Human (Homo sapiens) [TaxId: 9606]
(17)
2a
d1xqha1
A:117-193
2b
d1xqhe1
E:117-193
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1xqhA02 (A:194-336)
1b: CATH_1xqhE02 (E:194-336)
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Organisms
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)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Complex
(381)
Topology
:
Beta-clip-like
(18)
Homologous Superfamily
:
SET domain
(18)
Human (Homo sapiens)
(13)
1a
1xqhA02
A:194-336
1b
1xqhE02
E:194-336
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_MORN_1xqhE01 (E:117-128)
1b: PFAM_MORN_1xqhE02 (E:117-128)
2a: PFAM_SET_1xqhE03 (E:227-336)
2b: PFAM_SET_1xqhE04 (E:227-336)
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Clan
:
MORN
(14)
Family
:
MORN
(14)
Homo sapiens (Human)
(14)
1a
MORN-1xqhE01
E:117-128
1b
MORN-1xqhE02
E:117-128
Clan
:
no clan defined [family: SET]
(46)
Family
:
SET
(46)
Homo sapiens (Human)
(34)
2a
SET-1xqhE03
E:227-336
2b
SET-1xqhE04
E:227-336
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Asym.Unit (184 KB)
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