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1XPA
Asym. Unit
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Asym.Unit (35 KB)
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(1)
Title
:
SOLUTION STRUCTURE OF THE DNA-AND RPA-BINDING DOMAIN OF THE HUMAN REPAIR FACTOR XPA, NMR, 1 STRUCTURE
Authors
:
T. Ikegami, I. Kuraoka, M. Saijo, N. Kodo, Y. Kyogoku, K. Morikawa, K. Tanaka, M. Shirakawa
Date
:
06 Jul 98 (Deposition) - 22 Jul 99 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A
Keywords
:
Dna Repair, Nucleotide Excision Repair, Zinc-Finger
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Ikegami, I. Kuraoka, M. Saijo, N. Kodo, Y. Kyogoku, K. Morikawa, K. Tanaka, M. Shirakawa
Solution Structure Of The Dna- And Rpa-Binding Domain Of The Human Repair Factor Xpa.
Nat. Struct. Biol. V. 5 701 1998
(for further references see the
PDB file header
)
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: ZINC ION (ZNa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ZN
1
Ligand/Ion
ZINC ION
[
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]
Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: NUL (UNKNOWN)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS A:105 , CYS A:108 , CYS A:126 , CYS A:129
BINDING SITE FOR RESIDUE ZN A 220
2
NUL
UNKNOWN
CYS A:105 , CYS A:108 , CYS A:126 , CYS A:129
ZN BINDING SITE.
[
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]
SAPs(SNPs)/Variants
(3, 3)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_007728 (C108F, chain A, )
2: VAR_007729 (R130K, chain A, )
3: VAR_007730 (Q185H, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_007728
C
108
F
XPA_HUMAN
Disease (XP-A)
---
A
C
108
F
2
UniProt
VAR_007729
R
130
K
XPA_HUMAN
Disease (XP-A)
---
A
R
130
K
3
UniProt
VAR_007730
Q
185
H
XPA_HUMAN
Disease (XP-A)
---
A
Q
185
H
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: XPA_1 (A:105-129)
2: XPA_2 (A:138-154)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
XPA_1
PS00752
XPA protein signature 1.
XPA_HUMAN
105-129
1
A:105-129
2
XPA_2
PS00753
XPA protein signature 2.
XPA_HUMAN
138-154
1
A:138-154
[
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]
Exons
(3, 3)
Info
All Exons
Exon 1.3 (A:98-130)
Exon 1.4 (A:130-185)
Exon 1.5b (A:186-210)
View:
Select:
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All Exon Boundaries
1: Boundary 1.2/1.3
2: Boundary 1.3/1.4
3: Boundary 1.4/1.5b
4: Boundary 1.5b/1.8b
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000375128
1a
ENSE00001465835
chr9:
100459639-100459403
237
XPA_HUMAN
1-58
58
0
-
-
1.2
ENST00000375128
2
ENSE00000805600
chr9:
100456041-100455931
111
XPA_HUMAN
58-95
38
0
-
-
1.3
ENST00000375128
3
ENSE00000805601
chr9:
100451921-100451816
106
XPA_HUMAN
95-130
36
1
A:98-130
33
1.4
ENST00000375128
4
ENSE00000805602
chr9:
100449543-100449378
166
XPA_HUMAN
130-185
56
1
A:130-185
56
1.5b
ENST00000375128
5b
ENSE00000805603
chr9:
100447322-100447205
118
XPA_HUMAN
186-225
40
1
A:186-210
25
1.8b
ENST00000375128
8b
ENSE00001846881
chr9:
100437869-100437191
679
XPA_HUMAN
225-273
49
0
-
-
[
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SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d1xpaa1 (A:134-210)
2a: SCOP_d1xpaa2 (A:98-133)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Putative DNA-binding domain
(45)
Superfamily
:
Putative DNA-binding domain
(45)
Family
:
DNA repair factor XPA DNA- and RPA-binding domain, C-terminal subdomain
(2)
Protein domain
:
DNA repair factor XPA DNA- and RPA-binding domain, C-terminal subdomain
(2)
Human (Homo sapiens) [TaxId: 9606]
(2)
1a
d1xpaa1
A:134-210
Class
:
Small proteins
(3458)
Fold
:
Glucocorticoid receptor-like (DNA-binding domain)
(292)
Superfamily
:
Glucocorticoid receptor-like (DNA-binding domain)
(292)
Family
:
DNA repair factor XPA DNA- and RPA-binding domain, N-terminal subdomain
(2)
Protein domain
:
DNA repair factor XPA DNA- and RPA-binding domain, N-terminal subdomain
(2)
Human (Homo sapiens) [TaxId: 9606]
(2)
2a
d1xpaa2
A:98-133
[
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]
CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1xpaA00 (A:98-210)
View:
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Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Nucleotide Excision Repair Protein XPA (XPA-MBD); B Chain A
(2)
Homologous Superfamily
:
Nucleotide Excision Repair Protein Xpa (Xpa-mbd); Chain A
(2)
Human (Homo sapiens)
(2)
1a
1xpaA00
A:98-210
[
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]
Pfam Domains
(2, 2)
Info
all PFAM domains
1a: PFAM_XPA_C_1xpaA01 (A:134-186)
2a: PFAM_XPA_N_1xpaA02 (A:100-133)
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Clans
(
)
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)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: XPA_C]
(1)
Family
:
XPA_C
(1)
Homo sapiens (Human)
(1)
1a
XPA_C-1xpaA01
A:134-186
Clan
:
no clan defined [family: XPA_N]
(1)
Family
:
XPA_N
(1)
Homo sapiens (Human)
(1)
2a
XPA_N-1xpaA02
A:100-133
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Chain A
Asymmetric Unit 1
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