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1XOC
Asym. Unit
Info
Asym.Unit (101 KB)
Biol.Unit 1 (95 KB)
Biol.Unit 2 (186 KB)
Biol.Unit 3 (185 KB)
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(1)
Title
:
THE STRUCTURE OF THE OLIGOPEPTIDE-BINDING PROTEIN, APPA, FROM BACILLUS SUBTILIS IN COMPLEX WITH A NONAPEPTIDE.
Authors
:
V. M. Levdikov, E. V. Blagova, J. A. Brannigan, L. Wright, A. A. Vagin, A. J. Wilkinson
Date
:
06 Oct 04 (Deposition) - 25 Jan 05 (Release) - 10 Sep 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.55
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Biol. Unit 2: A,B (2x)
Biol. Unit 3: A,B (2x)
Keywords
:
Oligopeptide, Appa, Transport, Bacillus Subtilis, Transport Protein
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
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Reference
:
V. M. Levdikov, E. V. Blagova, J. A. Brannigan, L. Wright, A. A. Vagin, A. J. Wilkinson
The Structure Of The Oligopeptide-Binding Protein, Appa, From Bacillus Subtilis In Complex With A Nonapeptide.
J. Mol. Biol. V. 345 879 2005
(for further references see the
PDB file header
)
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Hetero Components
(1, 15)
Info
All Hetero Components
1a: ZINC ION (ZNa)
1b: ZINC ION (ZNb)
1c: ZINC ION (ZNc)
1d: ZINC ION (ZNd)
1e: ZINC ION (ZNe)
1f: ZINC ION (ZNf)
1g: ZINC ION (ZNg)
1h: ZINC ION (ZNh)
1i: ZINC ION (ZNi)
1j: ZINC ION (ZNj)
1k: ZINC ION (ZNk)
1l: ZINC ION (ZNl)
1m: ZINC ION (ZNm)
1n: ZINC ION (ZNn)
1o: ZINC ION (ZNo)
View:
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No.
Name
Count
Type
Full Name
1
ZN
15
Ligand/Ion
ZINC ION
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Sites
(15, 15)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:162 , HOH A:602 , HOH A:615 , HOH A:699 , HOH A:773 , HOH A:901
BINDING SITE FOR RESIDUE ZN A 521
02
AC2
SOFTWARE
ASP A:205 , HOH A:564 , HOH A:706
BINDING SITE FOR RESIDUE ZN A 522
03
AC3
SOFTWARE
ASP A:77 , ASP A:304 , HIS A:492 , HOH A:604
BINDING SITE FOR RESIDUE ZN A 523
04
AC4
SOFTWARE
LYS A:371 , GLU A:374 , HOH A:654 , HOH A:815
BINDING SITE FOR RESIDUE ZN A 524
05
AC5
SOFTWARE
GLU A:130 , LYS A:140 , ZN A:535 , HOH A:796 , HOH A:845
BINDING SITE FOR RESIDUE ZN A 525
06
AC6
SOFTWARE
ASP A:171 , ZN A:528
BINDING SITE FOR RESIDUE ZN A 526
07
AC7
SOFTWARE
ASP A:83 , GLU A:136 , GLU A:306 , HOH A:658 , HOH A:686
BINDING SITE FOR RESIDUE ZN A 527
08
AC8
SOFTWARE
ASP A:171 , ASP A:375 , ZN A:526 , HOH A:765
BINDING SITE FOR RESIDUE ZN A 528
09
AC9
SOFTWARE
GLU A:449 , LYS A:476 , HOH A:953
BINDING SITE FOR RESIDUE ZN A 529
10
BC1
SOFTWARE
GLU A:118 , HOH A:659 , HOH A:809 , HOH A:829 , HOH A:853 , HOH A:919
BINDING SITE FOR RESIDUE ZN A 530
11
BC2
SOFTWARE
ASN A:348 , ASP A:350 , ILE A:352 , ASP A:354
BINDING SITE FOR RESIDUE ZN A 531
12
BC3
SOFTWARE
ASP A:134 , ASP A:324 , HOH A:954
BINDING SITE FOR RESIDUE ZN A 532
13
BC4
SOFTWARE
ASP A:43 , ASP A:47 , ASP A:509 , HOH A:610 , HOH A:950 , HOH A:951 , HOH A:952
BINDING SITE FOR RESIDUE ZN A 533
14
BC5
SOFTWARE
LYS A:113 , ASP A:114 , ASP A:224 , HOH A:681 , HOH A:948
BINDING SITE FOR RESIDUE ZN A 534
15
BC6
SOFTWARE
GLU A:130 , LYS A:140 , ASP A:261 , ZN A:525
BINDING SITE FOR RESIDUE ZN A 535
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: SBP_BACTERIAL_5 (A:70-92)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SBP_BACTERIAL_5
PS01040
Bacterial extracellular solute-binding proteins, family 5 signature.
APPA_BACSU
93-115
1
A:70-92
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1xoca1 (A:17-520)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Periplasmic binding protein-like II
(813)
Superfamily
:
Periplasmic binding protein-like II
(813)
Family
:
Phosphate binding protein-like
(463)
Protein domain
:
Oligo-peptide binding protein (OPPA)
(34)
Bacillus subtilis [TaxId: 1423]
(1)
1a
d1xoca1
A:17-520
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_SBP_bac_5_1xocA01 (A:64-439)
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Clan
:
PBP
(391)
Family
:
SBP_bac_5
(33)
Bacillus subtilis
(1)
1a
SBP_bac_5-1xocA01
A:64-439
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Asym.Unit (101 KB)
Header - Asym.Unit
Biol.Unit 1 (95 KB)
Header - Biol.Unit 1
Biol.Unit 2 (186 KB)
Header - Biol.Unit 2
Biol.Unit 3 (185 KB)
Header - Biol.Unit 3
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