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1XNJ
Biol. Unit 1
Info
Asym.Unit (210 KB)
Biol.Unit 1 (202 KB)
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(1)
Title
:
APS COMPLEX OF HUMAN PAPS SYNTHETASE 1
Authors
:
S. Harjes, P. Bayer, A. J. Scheidig
Date
:
05 Oct 04 (Deposition) - 30 Aug 05 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.98
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Transferase, Atp Sulfurylase, Aps Kinase, Paps, Phosphoadenosine Phosphosulfate
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Harjes, P. Bayer, A. J. Scheidig
The Crystal Structure Of Human Paps Synthetase 1 Reveals Asymmetry In Substrate Binding
J. Mol. Biol. V. 347 623 2005
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Hetero Components
(2, 4)
Info
All Hetero Components
1a: ADENOSINE-5'-DIPHOSPHATE (ADPa)
2a: ADENOSINE-5'-PHOSPHOSULFATE (ADXa)
2b: ADENOSINE-5'-PHOSPHOSULFATE (ADXb)
2c: ADENOSINE-5'-PHOSPHOSULFATE (ADXc)
View:
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Label:
No.
Name
Count
Type
Full Name
1
ADP
1
Ligand/Ion
ADENOSINE-5'-DIPHOSPHATE
2
ADX
3
Ligand/Ion
ADENOSINE-5'-PHOSPHOSULFATE
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
PHE A:418 , GLN A:419 , LEU A:420 , ARG A:421 , ASN A:422 , HIS A:428 , MET A:495 , VAL A:520 , GLY A:521 , ARG A:522 , PRO A:524 , ALA A:525 , ARG A:561 , VAL A:562 , ALA A:563 , HOH A:2907 , HOH A:3123 , HOH A:3169 , HOH A:3173
BINDING SITE FOR RESIDUE ADX A 2900
2
AC2
SOFTWARE
LEU B:60 , GLY B:62 , ALA B:63 , GLY B:64 , LYS B:65 , THR B:66 , THR B:67 , ARG B:168 , THR B:204 , CYS B:207 , ASP B:208 , VAL B:209 , CYS B:212 , HOH B:2963 , HOH B:2989 , HOH B:3006 , HOH B:3076
BINDING SITE FOR RESIDUE ADP B 2800
3
AC3
SOFTWARE
SER B:61 , ARG B:92 , PHE B:101 , ARG B:106 , ASN B:109 , PHE B:131 , ILE B:132 , SER B:133 , PRO B:134 , LYS B:171 , LEU B:173 , LYS B:183 , PHE B:185 , THR B:186 , HOH B:3114
BINDING SITE FOR RESIDUE ADX B 2805
4
AC4
SOFTWARE
PHE B:418 , GLN B:419 , LEU B:420 , ARG B:421 , ASN B:422 , HIS B:425 , HIS B:428 , LEU B:431 , MET B:495 , VAL B:520 , GLY B:521 , ARG B:522 , PRO B:524 , ALA B:525 , ARG B:561 , VAL B:562 , ALA B:563 , HOH B:3020 , HOH B:3059 , HOH B:3063
BINDING SITE FOR RESIDUE ADX B 2700
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SAPs(SNPs)/Variants
(2, 4)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_014065 (L270F, chain A/B, )
2: VAR_014064 (S587L, chain A/B, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_014065
L
270
F
PAPS1_HUMAN
Polymorphism
1127008
A/B
L
270
F
2
UniProt
VAR_014064
S
587
L
PAPS1_HUMAN
Polymorphism
1127014
A/B
S
587
L
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
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Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(3, 6)
Info
All SCOP Domains
1a: SCOP_d1xnja1 (A:229-389)
1b: SCOP_d1xnjb1 (B:229-389)
2a: SCOP_d1xnja2 (A:390-624)
2b: SCOP_d1xnjb2 (B:390-623)
3a: SCOP_d1xnja3 (A:34-228)
3b: SCOP_d1xnjb3 (B:34-228)
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Protein Domains
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(
)
Organisms
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)
(
)
Class
:
All beta proteins
(24004)
Fold
:
PUA domain-like
(96)
Superfamily
:
PUA domain-like
(96)
Family
:
ATP sulfurylase N-terminal domain
(15)
Protein domain
:
ATP sulfurylase N-terminal domain
(15)
Human (Homo sapiens) [TaxId: 9606]
(3)
1a
d1xnja1
A:229-389
1b
d1xnjb1
B:229-389
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Adenine nucleotide alpha hydrolase-like
(440)
Superfamily
:
Nucleotidylyl transferase
(325)
Family
:
ATP sulfurylase catalytic domain
(16)
Protein domain
:
ATP sulfurylase catalytic domain
(15)
Human (Homo sapiens) [TaxId: 9606]
(3)
2a
d1xnja2
A:390-624
2b
d1xnjb2
B:390-623
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
Adenosine-5'phosphosulfate kinase (APS kinase)
(9)
Protein domain
:
Adenosine-5'phosphosulfate kinase (APS kinase)
(6)
Human (Homo sapiens) [TaxId: 9606]
(3)
3a
d1xnja3
A:34-228
3b
d1xnjb3
B:34-228
[
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1xnjB01 (B:34-232)
1b: CATH_1xnjA01 (A:34-232)
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)
Organisms
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)
(
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Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
Human (Homo sapiens)
(413)
1a
1xnjB01
B:34-232
1b
1xnjA01
A:34-232
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Pfam Domains
(3, 6)
Info
all PFAM domains
1a: PFAM_ATP_sulfurylase_1xnjB01 (B:393-618)
1b: PFAM_ATP_sulfurylase_1xnjB02 (B:393-618)
2a: PFAM_APS_kinase_1xnjB03 (B:51-209)
2b: PFAM_APS_kinase_1xnjB04 (B:51-209)
3a: PFAM_PUA_2_1xnjB05 (B:225-386)
3b: PFAM_PUA_2_1xnjB06 (B:225-386)
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Clan
:
HUP
(230)
Family
:
ATP-sulfurylase
(9)
Homo sapiens (Human)
(4)
1a
ATP-sulfurylase-1xnjB01
B:393-618
1b
ATP-sulfurylase-1xnjB02
B:393-618
Clan
:
P-loop_NTPase
(1112)
Family
:
APS_kinase
(10)
Homo sapiens (Human)
(7)
2a
APS_kinase-1xnjB03
B:51-209
2b
APS_kinase-1xnjB04
B:51-209
Clan
:
PUA
(42)
Family
:
PUA_2
(11)
Homo sapiens (Human)
(6)
3a
PUA_2-1xnjB05
B:225-386
3b
PUA_2-1xnjB06
B:225-386
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Asymmetric Unit 1
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