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1XNA
Asym. Unit
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Asym.Unit (47 KB)
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(1)
Title
:
NMR SOLUTION STRUCTURE OF THE SINGLE-STRAND BREAK REPAIR PROTEIN XRCC1-N-TERMINAL DOMAIN
Authors
:
A. Marintchev, G. P. Mullen
Date
:
27 Feb 99 (Deposition) - 01 Sep 99 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A
Keywords
:
Xrcc1, 3D Nmr, Dna Repair, Single-Strand Break Dna Binding, Dna Polymerase-Beta Binding, Beta Sandwich, Dna Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Marintchev, M. A. Mullen, M. W. Maciejewski, B. Pan, M. R. Gryk, G. P. Mullen
Solution Structure Of The Single-Strand Break Repair Protein Xrcc1 N-Terminal Domain.
Nat. Struct. Biol. V. 6 884 1999
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
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Label:
Sorry, no Info available
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]
SAPs(SNPs)/Variants
(4, 4)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_014773 (R7L, chain A, )
2: VAR_014774 (V10M, chain A, )
3: VAR_016168 (V72A, chain A, )
4: VAR_029228 (R107H, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_014773
R
7
L
XRCC1_HUMAN
Polymorphism
2307186
A
R
7
L
2
UniProt
VAR_014774
V
10
M
XRCC1_HUMAN
Polymorphism
2307171
A
V
10
M
3
UniProt
VAR_016168
V
72
A
XRCC1_HUMAN
Polymorphism
25496
A
V
72
A
4
UniProt
VAR_029228
R
107
H
XRCC1_HUMAN
Polymorphism
2228487
A
R
107
H
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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End label:
Sorry, no Info available
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Exons
(5, 5)
Info
All Exons
Exon 1.1 (A:1-17)
Exon 1.2 (A:18-48)
Exon 1.3 (A:49-85)
Exon 1.4 (A:86-138)
Exon 1.5 (A:139-151)
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/1.2
3: Boundary 1.2/1.3
4: Boundary 1.3/1.4
5: Boundary 1.4/1.5
6: Boundary 1.5/1.6
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000262887
1
ENSE00001213791
chr19:
44079730-44079560
171
XRCC1_HUMAN
1-17
17
1
A:1-17
17
1.2
ENST00000262887
2
ENSE00000897653
chr19:
44079154-44079062
93
XRCC1_HUMAN
18-48
31
1
A:18-48
31
1.3
ENST00000262887
3
ENSE00000710723
chr19:
44065172-44065062
111
XRCC1_HUMAN
49-85
37
1
A:49-85
37
1.4
ENST00000262887
4
ENSE00000710692
chr19:
44058956-44058798
159
XRCC1_HUMAN
86-138
53
1
A:86-138
53
1.5
ENST00000262887
5
ENSE00000710666
chr19:
44057835-44057761
75
XRCC1_HUMAN
139-163
25
1
A:139-151
13
1.6
ENST00000262887
6
ENSE00000847423
chr19:
44057664-44057553
112
XRCC1_HUMAN
164-201
38
0
-
-
1.7
ENST00000262887
7
ENSE00000710635
chr19:
44057243-44057134
110
XRCC1_HUMAN
201-237
37
0
-
-
1.8
ENST00000262887
8
ENSE00000710618
chr19:
44057060-44056949
112
XRCC1_HUMAN
238-275
38
0
-
-
1.9
ENST00000262887
9
ENSE00000710592
chr19:
44056427-44056169
259
XRCC1_HUMAN
275-361
87
0
-
-
1.10b
ENST00000262887
10b
ENSE00000710568
chr19:
44055839-44055723
117
XRCC1_HUMAN
361-400
40
0
-
-
1.11a
ENST00000262887
11a
ENSE00000710543
chr19:
44051129-44051036
94
XRCC1_HUMAN
400-431
32
0
-
-
1.13
ENST00000262887
13
ENSE00001674062
chr19:
44050879-44050747
133
XRCC1_HUMAN
432-476
45
0
-
-
1.14
ENST00000262887
14
ENSE00001737651
chr19:
44050258-44050204
55
XRCC1_HUMAN
476-494
19
0
-
-
1.15
ENST00000262887
15
ENSE00001695855
chr19:
44050109-44049970
140
XRCC1_HUMAN
494-541
48
0
-
-
1.16
ENST00000262887
16
ENSE00001614503
chr19:
44048386-44048296
91
XRCC1_HUMAN
541-571
31
0
-
-
1.17
ENST00000262887
17
ENSE00001797037
chr19:
44047839-44047764
76
XRCC1_HUMAN
571-596
26
0
-
-
1.18
ENST00000262887
18
ENSE00001669136
chr19:
44047657-44047464
194
XRCC1_HUMAN
597-633
37
0
-
-
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1xnaa_ (A:)
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Protein Domains
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)
(
)
Organisms
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)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Galactose-binding domain-like
(314)
Superfamily
:
Galactose-binding domain-like
(314)
Family
:
N-terminal domain of xrcc1
(5)
Protein domain
:
N-terminal domain of xrcc1
(5)
Human (Homo sapiens) [TaxId: 9606]
(5)
1a
d1xnaa_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1xnaA00 (A:1-151)
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Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Jelly Rolls
(1293)
Homologous Superfamily
:
Galactose-binding domain-like
(195)
Human (Homo sapiens)
(39)
1a
1xnaA00
A:1-151
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_XRCC1_N_1xnaA01 (A:1-151)
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Clans
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)
Clan
:
GBD
(153)
Family
:
XRCC1_N
(4)
Homo sapiens (Human)
(4)
1a
XRCC1_N-1xnaA01
A:1-151
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Chain A
Asymmetric Unit 1
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