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1XM9
Asym. Unit
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Asym.Unit (70 KB)
Biol.Unit 1 (66 KB)
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(1)
Title
:
STRUCTURE OF THE ARMADILLO REPEAT DOMAIN OF PLAKOPHILIN 1
Authors
:
H. J. Choi, W. I. Weis
Date
:
01 Oct 04 (Deposition) - 22 Mar 05 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Armadillo Repeat, Cell Adhesion
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. J. Choi, W. I. Weis
Structure Of The Armadillo Repeat Domain Of Plakophilin 1.
J. Mol. Biol. V. 346 367 2005
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sorry, no Info available
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Sites
(0, 0)
Info
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Sorry, no Info available
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_062171 (A442V, chain A, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_062171
A
463
V
PKP1_HUMAN
Polymorphism
10920171
A
A
442
V
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 3)
Info
All PROSITE Patterns/Profiles
1: ARM_REPEAT (A:287-314|A:329-372|A:574-602)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ARM_REPEAT
PS50176
Armadillo/plakoglobin ARM repeat profile.
PKP1_HUMAN
287-314
329-372
595-623
3
A:287-314
A:329-372
A:574-602
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Exons
(10, 10)
Info
All Exons
Exon 1.5 (A:244-282)
Exon 1.6 (A:283-352)
Exon 1.7 (A:352-411 (gaps))
Exon 1.8a (A:411-411)
Exon 1.9 (A:412-449)
Exon 1.10 (A:450-480)
Exon 1.11 (A:509-560)
Exon 1.12 (A:561-612)
Exon 1.13 (A:612-674)
Exon 1.14 (A:674-700)
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All Exon Boundaries
01: Boundary 1.3/1.5
02: Boundary 1.5/1.6
03: Boundary 1.6/1.7
04: Boundary 1.7/1.8a
05: Boundary 1.8a/1.9
06: Boundary 1.9/1.10
07: Boundary 1.10/1.11
08: Boundary 1.11/1.12
09: Boundary 1.12/1.13
10: Boundary 1.13/1.14
11: Boundary 1.14/1.15b
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000352845
1b
ENSE00001434679
chr1:
201252831-201253032
202
PKP1_HUMAN
1-68
68
0
-
-
1.2
ENST00000352845
2
ENSE00000791344
chr1:
201263070-201263173
104
PKP1_HUMAN
68-102
35
0
-
-
1.3
ENST00000352845
3
ENSE00000791345
chr1:
201282294-201282688
395
PKP1_HUMAN
103-234
132
0
-
-
1.5
ENST00000352845
5
ENSE00001192836
chr1:
201285681-201285825
145
PKP1_HUMAN
234-282
49
1
A:244-282
39
1.6
ENST00000352845
6
ENSE00000791348
chr1:
201286700-201286907
208
PKP1_HUMAN
283-352
70
1
A:283-352
70
1.7
ENST00000352845
7
ENSE00000791349
chr1:
201287746-201287923
178
PKP1_HUMAN
352-411
60
1
A:352-411 (gaps)
60
1.8a
ENST00000352845
8a
ENSE00001074129
chr1:
201288944-201289006
63
PKP1_HUMAN
411-432
22
1
A:411-411
1
1.9
ENST00000352845
9
ENSE00000791350
chr1:
201289395-201289509
115
PKP1_HUMAN
432-470
39
1
A:412-449
38
1.10
ENST00000352845
10
ENSE00000791351
chr1:
201291106-201291261
156
PKP1_HUMAN
471-522
52
1
A:450-480
31
1.11
ENST00000352845
11
ENSE00000791353
chr1:
201292141-201292317
177
PKP1_HUMAN
523-581
59
1
A:509-560
52
1.12
ENST00000352845
12
ENSE00000523184
chr1:
201293556-201293709
154
PKP1_HUMAN
582-633
52
1
A:561-612
52
1.13
ENST00000352845
13
ENSE00000523189
chr1:
201294069-201294255
187
PKP1_HUMAN
633-695
63
1
A:612-674
63
1.14
ENST00000352845
14
ENSE00000791356
chr1:
201294882-201294966
85
PKP1_HUMAN
695-723
29
1
A:674-700
27
1.15b
ENST00000352845
15b
ENSE00001435420
chr1:
201297890-201297964
75
PKP1_HUMAN
724-747
24
0
-
-
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1xm9a1 (A:244-700)
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Class
:
All alpha proteins
(14657)
Fold
:
alpha-alpha superhelix
(690)
Superfamily
:
ARM repeat
(317)
Family
:
Plakophilin 1 helical region
(1)
Protein domain
:
Plakophilin 1
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d1xm9a1
A:244-700
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CATH Domains
(0, 0)
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Arm_1xm9A01 (A:276-316)
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Clan
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TPR
(230)
Family
:
Arm
(24)
Homo sapiens (Human)
(19)
1a
Arm-1xm9A01
A:276-316
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Asymmetric Unit 1
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