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1XKU
Asym. Unit
Info
Asym.Unit (59 KB)
Biol.Unit 1 (104 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE DIMERIC PROTEIN CORE OF DECORIN, THE ARCHETYPAL SMALL LEUCINE-RICH REPEAT PROTEOGLYCAN
Authors
:
P. G. Scott, P. A. Mcewan, C. M. Dodd, E. M. Bergmann, P. N. Bishop, J. Bell
Date
:
29 Sep 04 (Deposition) - 02 Nov 04 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.15
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Proteoglycan, Leucine-Rich Repeat, Structural Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. G. Scott, P. A. Mcewan, C. M. Dodd, E. M. Bergmann, P. N. Bishop, J. Bella
Crystal Structure Of The Dimeric Protein Core Of Decorin, The Archetypal Small Leucine-Rich Repeat Proteoglycan
Proc. Natl. Acad. Sci. Usa V. 101 15633 2004
(for further references see the
PDB file header
)
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Hetero Components
(2, 4)
Info
All Hetero Components
1a: N-ACETYL-D-GLUCOSAMINE (NAGa)
1b: N-ACETYL-D-GLUCOSAMINE (NAGb)
1c: N-ACETYL-D-GLUCOSAMINE (NAGc)
2a: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
NAG
3
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
2
TRS
1
Ligand/Ion
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASN A:155 , PRO A:156 , LYS A:158 , ASN A:182 , TRP A:308 , HOH A:932 , HOH A:948 , HOH A:949
BINDING SITE FOR RESIDUE NAG A 800
2
AC2
SOFTWARE
ASN A:233
BINDING SITE FOR RESIDUE NAG A 801
3
AC3
SOFTWARE
ASN A:274
BINDING SITE FOR RESIDUE NAG A 802
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 8)
Info
All PROSITE Patterns/Profiles
1: LRR (A:53-74|A:77-98|A:101-122|A:123-14...)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
LRR
PS51450
Leucine-rich repeat profile.
PGS2_BOVIN
83-104
107-128
131-152
153-173
223-243
247-268
271-293
294-315
8
A:53-74
A:77-98
A:101-122
A:123-143
A:193-213
A:217-238
A:241-263
A:264-285
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Exons
(7, 7)
Info
All Exons
Exon 1.3 (A:22-42)
Exon 1.4 (A:42-79)
Exon 1.5 (A:80-151)
Exon 1.6 (A:151-189)
Exon 1.7 (A:189-220)
Exon 1.8 (A:220-266)
Exon 1.9b (A:267-326)
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All Exon Boundaries
1: Boundary 1.1/1.3
2: Boundary 1.3/1.4
3: Boundary 1.4/1.5
4: Boundary 1.5/1.6
5: Boundary 1.6/1.7
6: Boundary 1.7/1.8
7: Boundary 1.8/1.9b
8: Boundary 1.9b/-
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSBTAT00000004562
1
ENSBTAE00000300120
chr5:
23762660-23762470
191
PGS2_BOVIN
-
0
0
-
-
1.3
ENSBTAT00000004562
3
ENSBTAE00000036594
chr5:
23758480-23758234
247
PGS2_BOVIN
1-72
72
1
A:22-42
21
1.4
ENSBTAT00000004562
4
ENSBTAE00000036606
chr5:
23746370-23746258
113
PGS2_BOVIN
72-109
38
1
A:42-79
38
1.5
ENSBTAT00000004562
5
ENSBTAE00000036610
chr5:
23739602-23739389
214
PGS2_BOVIN
110-181
72
1
A:80-151
72
1.6
ENSBTAT00000004562
6
ENSBTAE00000036614
chr5:
23738587-23738474
114
PGS2_BOVIN
181-219
39
1
A:151-189
39
1.7
ENSBTAT00000004562
7
ENSBTAE00000036619
chr5:
23732791-23732698
94
PGS2_BOVIN
219-250
32
1
A:189-220
32
1.8
ENSBTAT00000004562
8
ENSBTAE00000036625
chr5:
23728847-23728709
139
PGS2_BOVIN
250-296
47
1
A:220-266
47
1.9b
ENSBTAT00000004562
9b
ENSBTAE00000036725
chr5:
23724466-23723438
1029
PGS2_BOVIN
297-360
64
1
A:267-326
60
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1xkua_ (A:)
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(
)
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Folds
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)
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)
Superfamilies
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)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
(112)
Superfamily
:
L domain-like
(93)
Family
:
Ngr ectodomain-like
(21)
Protein domain
:
Decorin
(3)
Cow (Bos taurus) [TaxId: 9913]
(3)
1a
d1xkua_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1xkuA00 (A:22-326)
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Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Horseshoe
(92)
Topology
:
Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
(73)
Homologous Superfamily
:
Ribonuclease Inhibitor
(73)
Cattle (Bos taurus)
(5)
1a
1xkuA00
A:22-326
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Pfam Domains
(0, 0)
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all PFAM domains
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Chain A
Asymmetric Unit 1
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