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1XKS
Asym. Unit
Info
Asym.Unit (68 KB)
Biol.Unit 1 (62 KB)
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(1)
Title
:
THE CRYSTAL STRUCTURE OF THE N-TERMINAL DOMAIN OF NUP133 REVEALS A BETA-PROPELLER FOLD COMMON TO SEVERAL NUCLEOPORINS
Authors
:
I. C. Berke, T. Boehmer, G. Blobel, T. U. Schwartz
Date
:
29 Sep 04 (Deposition) - 07 Dec 04 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.35
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Beta-Propeller, Helical Insertions, Protein Transport
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
I. C. Berke, T. Boehmer, G. Blobel, T. U. Schwartz
Structural And Functional Analysis Of Nup133 Domains Reveal Modular Building Blocks Of The Nuclear Pore Complex.
J. Cell Biol. V. 167 591 2004
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Hetero Components
(0, 0)
Info
All Hetero Components
View:
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Label:
Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
View:
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Label:
Sorry, no Info available
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]
SAPs(SNPs)/Variants
(7, 7)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_030829 (T106P, chain A, )
2: VAR_030830 (I294V, chain A, )
3: VAR_035854 (G326V, chain A, )
4: VAR_NU133_HUMAN_CCDS1579_1_01 (G326V, chain A, )
5: VAR_030831 (Q406R, chain A, )
6: VAR_035855 (G448R, chain A, )
7: VAR_NU133_HUMAN_CCDS1579_1_02 (G448R, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_030829
T
106
P
NU133_HUMAN
Polymorphism
428231
A
T
106
P
2
UniProt
VAR_030830
I
294
V
NU133_HUMAN
Polymorphism
11805194
A
I
294
V
3
UniProt
VAR_035854
G
326
V
NU133_HUMAN
Unclassified
---
A
G
326
V
4
CancerSNP
VAR_NU133_HUMAN_CCDS1579_1_01
*
G
326
V
NU133_HUMAN
Disease (Breast cancer)
---
A
G
326
V
5
UniProt
VAR_030831
Q
406
R
NU133_HUMAN
Polymorphism
1065674
A
Q
406
R
6
UniProt
VAR_035855
G
448
R
NU133_HUMAN
Unclassified
---
A
G
448
R
7
CancerSNP
VAR_NU133_HUMAN_CCDS1579_1_02
*
G
448
R
NU133_HUMAN
Disease (Breast cancer)
---
A
G
448
R
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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End label:
Sorry, no Info available
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Exons
(10, 10)
Info
All Exons
Exon 1.2 (A:75-101)
Exon 1.3 (A:101-135)
Exon 1.4 (A:136-171 (gaps))
Exon 1.5 (A:172-216 (gaps))
Exon 1.7 (A:217-273 (gaps))
Exon 1.8 (A:274-325)
Exon 1.9 (A:326-349)
Exon 1.10 (A:349-398)
Exon 1.11 (A:399-448)
Exon 1.12 (A:448-477)
View:
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All Exon Boundaries
01: Boundary 1.1a/1.2
02: Boundary 1.2/1.3
03: Boundary 1.3/1.4
04: Boundary 1.4/1.5
05: Boundary 1.5/1.7
06: Boundary 1.7/1.8
07: Boundary 1.8/1.9
08: Boundary 1.9/1.10
09: Boundary 1.10/1.11
10: Boundary 1.11/1.12
11: Boundary 1.12/1.13
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000261396
1a
ENSE00001263815
chr1:
229644088-229643815
274
NU133_HUMAN
1-61
61
0
-
-
1.2
ENST00000261396
2
ENSE00001069992
chr1:
229641905-229641787
119
NU133_HUMAN
61-101
41
1
A:75-101
27
1.3
ENST00000261396
3
ENSE00001069983
chr1:
229637849-229637746
104
NU133_HUMAN
101-135
35
1
A:101-135
35
1.4
ENST00000261396
4
ENSE00001069988
chr1:
229636610-229636503
108
NU133_HUMAN
136-171
36
1
A:136-171 (gaps)
36
1.5
ENST00000261396
5
ENSE00001069985
chr1:
229635565-229635431
135
NU133_HUMAN
172-216
45
1
A:172-216 (gaps)
45
1.7
ENST00000261396
7
ENSE00001069978
chr1:
229634053-229633883
171
NU133_HUMAN
217-273
57
1
A:217-273 (gaps)
57
1.8
ENST00000261396
8
ENSE00001069994
chr1:
229631794-229631639
156
NU133_HUMAN
274-325
52
1
A:274-325
52
1.9
ENST00000261396
9
ENSE00001069984
chr1:
229631312-229631242
71
NU133_HUMAN
326-349
24
1
A:326-349
24
1.10
ENST00000261396
10
ENSE00001069987
chr1:
229625849-229625702
148
NU133_HUMAN
349-398
50
1
A:349-398
50
1.11
ENST00000261396
11
ENSE00001015850
chr1:
229623360-229623213
148
NU133_HUMAN
399-448
50
1
A:399-448
50
1.12
ENST00000261396
12
ENSE00001015859
chr1:
229622275-229622118
158
NU133_HUMAN
448-500
53
1
A:448-477
30
1.13
ENST00000261396
13
ENSE00000961359
chr1:
229619892-229619801
92
NU133_HUMAN
501-531
31
0
-
-
1.14
ENST00000261396
14
ENSE00000594035
chr1:
229613507-229613344
164
NU133_HUMAN
531-586
56
0
-
-
1.15
ENST00000261396
15
ENSE00000793031
chr1:
229611479-229611385
95
NU133_HUMAN
586-617
32
0
-
-
1.16
ENST00000261396
16
ENSE00000793030
chr1:
229606551-229606327
225
NU133_HUMAN
618-692
75
0
-
-
1.17
ENST00000261396
17
ENSE00000961360
chr1:
229602503-229602381
123
NU133_HUMAN
693-733
41
0
-
-
1.18
ENST00000261396
18
ENSE00000594038
chr1:
229601266-229601167
100
NU133_HUMAN
734-767
34
0
-
-
1.19c
ENST00000261396
19c
ENSE00001015853
chr1:
229600622-229600371
252
NU133_HUMAN
767-851
85
0
-
-
1.20
ENST00000261396
20
ENSE00000961361
chr1:
229599423-229599290
134
NU133_HUMAN
851-895
45
0
-
-
1.21a
ENST00000261396
21a
ENSE00000961362
chr1:
229596516-229596358
159
NU133_HUMAN
896-948
53
0
-
-
1.22
ENST00000261396
22
ENSE00000961363
chr1:
229594043-229593908
136
NU133_HUMAN
949-994
46
0
-
-
1.23
ENST00000261396
23
ENSE00000961364
chr1:
229588390-229588272
119
NU133_HUMAN
994-1033
40
0
-
-
1.24c
ENST00000261396
24c
ENSE00000961365
chr1:
229586352-229586272
81
NU133_HUMAN
1034-1060
27
0
-
-
1.25a
ENST00000261396
25a
ENSE00000961366
chr1:
229584937-229584873
65
NU133_HUMAN
1061-1082
22
0
-
-
1.26
ENST00000261396
26
ENSE00000961367
chr1:
229580749-229580661
89
NU133_HUMAN
1082-1112
31
0
-
-
1.27c
ENST00000261396
27c
ENSE00001879885
chr1:
229577787-229577045
743
NU133_HUMAN
1112-1156
45
0
-
-
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1xksa_ (A:)
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Folds
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Protein Domains
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(
)
Organisms
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)
(
)
Class
:
All beta proteins
(24004)
Fold
:
7-bladed beta-propeller
(245)
Superfamily
:
Nucleoporin domain
(3)
Family
:
Nucleoporin domain
(3)
Protein domain
:
Nuclear pore complex protein Nup133
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d1xksa_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1xksA00 (A:75-477)
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)
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Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
7 Propellor
(136)
Topology
:
Methylamine Dehydrogenase; Chain H
(136)
Homologous Superfamily
:
YVTN repeat-like/Quinoprotein amine dehydrogenase
(76)
Human (Homo sapiens)
(7)
1a
1xksA00
A:75-477
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Nucleoporin_N_1xksA01 (A:75-472)
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Clans
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(
)
Clan
:
Beta_propeller
(192)
Family
:
Nucleoporin_N
(1)
Homo sapiens (Human)
(1)
1a
Nucleoporin_N-1xksA01
A:75-472
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