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1XK5
Asym. Unit
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Asym.Unit (41 KB)
Biol.Unit 1 (38 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE M3G-CAP-BINDING DOMAIN OF SNURPORTIN1 IN COMPLEX WITH A M3GPPPG-CAP DINUCLEOTIDE
Authors
:
A. Strasser, A. Dickmanns, R. Luehrmann, R. Ficner
Date
:
27 Sep 04 (Deposition) - 07 Jun 05 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Protein-Rna-Complex, Transport Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Strasser, A. Dickmanns, R. Luehrmann, R. Ficner
Structural Basis For M(3)G-Cap-Mediated Nuclear Import Of Spliceosomal Usnrnps By Snurportin1
Embo J. V. 24 2235 2005
(for further references see the
PDB file header
)
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: 2,2,7-TRIMETHYL-GUANOSINE-5'-TRIPH... (TPGa)
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Label:
No.
Name
Count
Type
Full Name
1
TPG
1
Ligand/Ion
2,2,7-TRIMETHYL-GUANOSINE-5'-TRIPHOSPHATE-5'-GUANOSINE
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HOH A:1 , HOH A:7 , HOH A:9 , HOH A:12 , HOH A:23 , HOH A:28 , HOH A:45 , HOH A:79 , HOH A:80 , SER A:105 , GLU A:106 , TRP A:107 , GLN A:117 , GLU A:118 , GLY A:127 , LYS A:128 , ARG A:129 , LYS A:144 , ASP A:255 , LEU A:258 , LYS A:262 , TRP A:276
BINDING SITE FOR RESIDUE TPG A 400
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(7, 7)
Info
All Exons
Exon 1.4 (A:97-101)
Exon 1.5 (A:102-136)
Exon 1.6 (A:137-168)
Exon 1.7 (A:168-200)
Exon 1.8 (A:201-226)
Exon 1.9 (A:227-253)
Exon 1.10 (A:254-300)
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All Exon Boundaries
1: Boundary 1.3b/1.4
2: Boundary 1.4/1.5
3: Boundary 1.5/1.6
4: Boundary 1.6/1.7
5: Boundary 1.7/1.8
6: Boundary 1.8/1.9
7: Boundary 1.9/1.10
8: Boundary 1.10/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000308588
1b
ENSE00001328747
chr15:
75918156-75918007
150
SPN1_HUMAN
-
0
0
-
-
1.3b
ENST00000308588
3b
ENSE00001690493
chr15:
75913397-75913235
163
SPN1_HUMAN
1-53
53
0
-
-
1.4
ENST00000308588
4
ENSE00001208446
chr15:
75909893-75909749
145
SPN1_HUMAN
53-101
49
1
A:97-101
5
1.5
ENST00000308588
5
ENSE00001295612
chr15:
75902335-75902231
105
SPN1_HUMAN
102-136
35
1
A:102-136
35
1.6
ENST00000308588
6
ENSE00001310397
chr15:
75901992-75901899
94
SPN1_HUMAN
137-168
32
1
A:137-168
32
1.7
ENST00000308588
7
ENSE00001311880
chr15:
75899654-75899557
98
SPN1_HUMAN
168-200
33
1
A:168-200
33
1.8
ENST00000308588
8
ENSE00001208428
chr15:
75897568-75897491
78
SPN1_HUMAN
201-226
26
1
A:201-226
26
1.9
ENST00000308588
9
ENSE00001161530
chr15:
75893559-75893479
81
SPN1_HUMAN
227-253
27
1
A:227-253
27
1.10
ENST00000308588
10
ENSE00001295764
chr15:
75891022-75890424
599
SPN1_HUMAN
254-360
107
1
A:254-300
47
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1xk5a_ (A:)
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Protein Domains
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Organisms
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(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
ATP-grasp
(191)
Superfamily
:
DNA ligase/mRNA capping enzyme, catalytic domain
(33)
Family
:
m3G-cap binding domain of snurportin-1
(2)
Protein domain
:
m3G-cap binding domain of snurportin-1
(2)
Human (Homo sapiens) [TaxId: 9606]
(2)
1a
d1xk5a_
A:
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CATH Domains
(0, 0)
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Pfam Domains
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Chain A
Asymmetric Unit 1
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Asym.Unit (41 KB)
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