PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
1XK1
Asym. Unit
Info
Asym.Unit (80 KB)
Biol.Unit 1 (39 KB)
Biol.Unit 2 (39 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
CRYSTAL STRUCTURES OF THE G139A, G139A-NO AND G143H MUTANTS OF HUMAN HEME OXYGENASE-1
Authors
:
L. Lad, P. R. Ortiz De Montellano, T. L. Poulos
Date
:
26 Sep 04 (Deposition) - 13 Dec 05 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.08
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Heme, Heme Degredation, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. Lad, A. Koshkin, P. R. Ortiz De Montellano, T. L. Poulos
Crystal Structures Of The G139A, G139A-No And G143H Mutants Of Human Heme Oxygenase-1. A Finely Tuned Hydrogen-Bonding Network Controls Oxygenase Versus Peroxidase Activity.
J. Biol. Inorg. Chem. V. 10 138 2005
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(1, 2)
Info
All Hetero Components
1a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
1b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
HEM
2
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
[
close Hetero Component info
]
Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LYS A:18 , HIS A:25 , ALA A:28 , GLU A:29 , MET A:34 , GLN A:38 , TYR A:134 , GLY A:139 , HIS A:143 , PHE A:207 , ASN A:210 , HOH A:319 , HOH A:360
BINDING SITE FOR RESIDUE HEM A 300
2
AC2
SOFTWARE
LYS B:18 , HIS B:25 , GLU B:29 , GLN B:38 , TYR B:134 , THR B:135 , ARG B:136 , GLY B:139 , HIS B:143 , ASN B:210 , PHE B:214 , HOH B:315
BINDING SITE FOR RESIDUE HEM B 300
[
close Site info
]
SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_022156 (P106L, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_022156
P
106
L
HMOX1_HUMAN
Polymorphism
9282702
A/B
P
106
L
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: HEME_OXYGENASE (A:129-139,B:129-139)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
HEME_OXYGENASE
PS00593
Heme oxygenase signature.
HMOX1_HUMAN
129-139
2
A:129-139
B:129-139
[
close PROSITE info
]
Exons
(3, 6)
Info
All Exons
Exon 1.3 (A:10-48 | B:10-48)
Exon 1.4c (A:49-212 | B:49-212)
Exon 1.5a (A:213-223 | B:213-223)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.2a/1.3
2: Boundary 1.3/1.4c
3: Boundary 1.4c/1.5a
4: Boundary 1.5a/1.6
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2a
ENST00000216117
2a
ENSE00001915869
chr22:
35776828-35777189
362
HMOX1_HUMAN
1-8
8
0
-
-
1.3
ENST00000216117
3
ENSE00000880006
chr22:
35779099-35779219
121
HMOX1_HUMAN
8-48
41
2
A:10-48
B:10-48
39
39
1.4c
ENST00000216117
4c
ENSE00000653517
chr22:
35782678-35783169
492
HMOX1_HUMAN
49-212
164
2
A:49-212
B:49-212
164
164
1.5a
ENST00000216117
5a
ENSE00000653518
chr22:
35785857-35785956
100
HMOX1_HUMAN
213-246
34
2
A:213-223
B:213-223
11
11
1.6
ENST00000216117
6
ENSE00001380117
chr22:
35789461-35790207
747
HMOX1_HUMAN
246-288
43
0
-
-
[
close EXON info
]
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1xk1a1 (A:10-223)
1b: SCOP_d1xk1b_ (B:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Heme oxygenase-like
(107)
Superfamily
:
Heme oxygenase-like
(107)
Family
:
Eukaryotic type heme oxygenase
(69)
Protein domain
:
Heme oxygenase-1 (HO-1)
(49)
Human (Homo sapiens) [TaxId: 9606]
(23)
1a
d1xk1a1
A:10-223
1b
d1xk1b_
B:
[
close SCOP info
]
CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1xk1A00 (A:10-223)
1b: CATH_1xk1B00 (B:10-223)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Heme Oxygenase; Chain A
(84)
Homologous Superfamily
:
Heme Oxygenase; Chain A
(84)
Human (Homo sapiens)
(25)
1a
1xk1A00
A:10-223
1b
1xk1B00
B:10-223
[
close CATH info
]
Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Heme_oxygenase_1xk1B01 (B:11-216)
1b: PFAM_Heme_oxygenase_1xk1B02 (B:11-216)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
HO
(49)
Family
:
Heme_oxygenase
(37)
Homo sapiens (Human)
(21)
1a
Heme_oxygenase-1xk1B01
B:11-216
1b
Heme_oxygenase-1xk1B02
B:11-216
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (80 KB)
Header - Asym.Unit
Biol.Unit 1 (39 KB)
Header - Biol.Unit 1
Biol.Unit 2 (39 KB)
Header - Biol.Unit 2
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
1XK1
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
