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1XJV
Asym. Unit
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Asym.Unit (60 KB)
Biol.Unit 1 (56 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN POT1 BOUND TO TELOMERIC SINGLE-STRANDED DNA (TTAGGGTTAG)
Authors
:
M. Lei, E. R. Podell, T. R. Cech
Date
:
25 Sep 04 (Deposition) - 14 Dec 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.73
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Telomere; Protein-Dna Complex; Single-Stranded Dna, Transcription/Dna Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Lei, E. R. Podell, T. R. Cech
Structure Of Human Pot1 Bound To Telomeric Single-Stranded Dna Provides A Model For Chromosome End-Protection
Nat. Struct. Mol. Biol. V. 11 1223 2004
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
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Label:
Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
View:
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Label:
Sorry, no Info available
[
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]
SAPs(SNPs)/Variants
(6, 6)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_071390 (Y89C, chain A, )
2: VAR_071391 (Q94E, chain A, )
3: VAR_071392 (R137H, chain A, )
4: VAR_071393 (D224N, chain A, )
5: VAR_071394 (S270N, chain A, )
6: VAR_071395 (R273L, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_071390
Y
89
C
POTE1_HUMAN
Disease (CMM10)
---
A
Y
89
C
2
UniProt
VAR_071391
Q
94
E
POTE1_HUMAN
Disease (CMM10)
---
A
Q
94
E
3
UniProt
VAR_071392
R
137
H
POTE1_HUMAN
Disease (CMM10)
---
A
R
137
H
4
UniProt
VAR_071393
D
224
N
POTE1_HUMAN
Disease (CMM10)
---
A
D
224
N
5
UniProt
VAR_071394
S
270
N
POTE1_HUMAN
Disease (CMM10)
---
A
S
270
N
6
UniProt
VAR_071395
R
273
L
POTE1_HUMAN
Disease (CMM10)
---
A
R
273
L
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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End label:
Sorry, no Info available
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Exons
(6, 6)
Info
All Exons
Exon 1.8 (A:6-42)
Exon 1.9b (A:42-85)
Exon 1.10a (A:86-182 (gaps))
Exon 1.11b (A:183-234)
Exon 1.12 (A:235-290)
Exon 1.13 (A:290-299)
View:
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All Exon Boundaries
1: Boundary 1.6a/1.8
2: Boundary 1.8/1.9b
3: Boundary 1.9b/1.10a
4: Boundary 1.10a/1.11b
5: Boundary 1.11b/1.12
6: Boundary 1.12/1.13
7: Boundary 1.13/1.15
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000357628
1b
ENSE00001894981
chr7:
124570035-124569848
188
POTE1_HUMAN
-
0
0
-
-
1.2b
ENST00000357628
2b
ENSE00001405298
chr7:
124569053-124568869
185
POTE1_HUMAN
-
0
0
-
-
1.3
ENST00000357628
3
ENSE00001404825
chr7:
124555700-124555628
73
POTE1_HUMAN
-
0
0
-
-
1.4
ENST00000357628
4
ENSE00001401958
chr7:
124538428-124538315
114
POTE1_HUMAN
-
0
0
-
-
1.6a
ENST00000357628
6a
ENSE00002191404
chr7:
124537266-124537219
48
POTE1_HUMAN
1-3
3
0
-
-
1.8
ENST00000357628
8
ENSE00001623568
chr7:
124532434-124532320
115
POTE1_HUMAN
4-42
39
1
A:6-42
37
1.9b
ENST00000357628
9b
ENSE00001785664
chr7:
124511095-124510965
131
POTE1_HUMAN
42-85
44
1
A:42-85
44
1.10a
ENST00000357628
10a
ENSE00001732194
chr7:
124503694-124503404
291
POTE1_HUMAN
86-182
97
1
A:86-182 (gaps)
97
1.11b
ENST00000357628
11b
ENSE00001136138
chr7:
124499166-124499011
156
POTE1_HUMAN
183-234
52
1
A:183-234
52
1.12
ENST00000357628
12
ENSE00001136133
chr7:
124493192-124493026
167
POTE1_HUMAN
235-290
56
1
A:235-290
56
1.13
ENST00000357628
13
ENSE00001136130
chr7:
124492005-124491926
80
POTE1_HUMAN
290-317
28
1
A:290-299
10
1.15
ENST00000357628
15
ENSE00001611896
chr7:
124487052-124486996
57
POTE1_HUMAN
317-336
20
0
-
-
1.16b
ENST00000357628
16b
ENSE00001701311
chr7:
124483017-124482861
157
POTE1_HUMAN
336-388
53
0
-
-
1.17b
ENST00000357628
17b
ENSE00001715885
chr7:
124481232-124481027
206
POTE1_HUMAN
388-457
70
0
-
-
1.18
ENST00000357628
18
ENSE00001685271
chr7:
124475468-124475333
136
POTE1_HUMAN
457-502
46
0
-
-
1.19
ENST00000357628
19
ENSE00001773174
chr7:
124469396-124469308
89
POTE1_HUMAN
502-532
31
0
-
-
1.21a
ENST00000357628
21a
ENSE00001618916
chr7:
124467359-124467268
92
POTE1_HUMAN
532-562
31
0
-
-
1.22
ENST00000357628
22
ENSE00001688617
chr7:
124465411-124465306
106
POTE1_HUMAN
563-598
36
0
-
-
1.23e
ENST00000357628
23e
ENSE00001863642
chr7:
124464128-124462440
1689
POTE1_HUMAN
598-634
37
0
-
-
[
close EXON info
]
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1xjva1 (A:6-145)
1b: SCOP_d1xjva2 (A:149-299)
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(
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(
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Class
:
All beta proteins
(24004)
Fold
:
OB-fold
(1179)
Superfamily
:
Nucleic acid-binding proteins
(590)
Family
:
Single strand DNA-binding domain, SSB
(96)
Protein domain
:
Protection of telomeres protein 1, Pot1
(3)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d1xjva1
A:6-145
1b
d1xjva2
A:149-299
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CATH Domains
(2, 2)
Info
all CATH domains
1a: CATH_1xjvA01 (A:6-150)
2a: CATH_1xjvA02 (A:151-299)
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)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
OB fold (Dihydrolipoamide Acetyltransferase, E2P)
(1040)
Homologous Superfamily
:
Nucleic acid-binding proteins
(483)
[unclassified]
(49)
1a
1xjvA01
A:6-150
Homologous Superfamily
:
Protection of telomeres; domain 2
(3)
[unclassified]
(1)
2a
1xjvA02
A:151-299
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Telo_bind_1xjvA01 (A:11-141)
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(
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)
(
)
Clan
:
OB
(224)
Family
:
Telo_bind
(5)
Homo sapiens (Human)
(3)
1a
Telo_bind-1xjvA01
A:11-141
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