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1XJP
Theor. Model
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Theoretical Model (178 KB)
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(1)
Title
:
MOLECULAR DOCKING MODEL OF SARS CORONAVIRUS SPIKE PROTEIN S1 SUBUNIT WITH ITS RECEPTOR, ACE2
Authors
:
Y. Zhang
Date
:
23 Sep 04 (Deposition) - 12 Oct 04 (Release) - 26 Jul 05 (Revision)
Method
:
THEORETICAL MODEL
Resolution
:
NOT APPLICABLE
Chains
:
Theor. Model : A,B
Keywords
:
Envelope Protein, Transmembrane
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Zhang, N. Zheng, P. Hao, Y. Cao, Y. Zhong
A Molecular Docking Model Of Sars-Cov S1 Protein In Complex With Its Receptor, Human Ace2
Comput. Biol. Chem. V. 29 254 2005
(for further references see the
PDB file header
)
[
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]
Hetero Components
(0, 0)
Info
All Hetero Components
View:
Select:
Label:
Sorry, no Info available
[
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]
Sites
(0, 0)
Info
All Sites
View:
Select:
Label:
Sorry, no Info available
[
close Site info
]
SAPs(SNPs)/Variants
(30, 30)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_023082 (K26R, chain B, )
02: VAR_SPIKE_CVHSA_001 (S49L, chain A, )
03: VAR_SPIKE_CVHSA_002 (G77D, chain A, )
04: VAR_SPIKE_CVHSA_003 (N78D, chain A, )
05: VAR_SPIKE_CVHSA_004 (N118S, chain A, )
06: VAR_SPIKE_CVHSA_005 (A139V, chain A, )
07: VAR_SPIKE_CVHSA_006 (M144L, chain A, )
08: VAR_SPIKE_CVHSA_007 (Q147R, chain A, )
09: VAR_SPIKE_CVHSA_008 (F193S, chain A, )
10: VAR_SPIKE_CVHSA_009 (N227K, chain A, )
11: VAR_SPIKE_CVHSA_010 (S239L, chain A, )
12: VAR_SPIKE_CVHSA_011 (I244T, chain A, )
13: VAR_SPIKE_CVHSA_012 (T261K, chain A, )
14: VAR_SPIKE_CVHSA_013 (G311R, chain A, )
15: VAR_SPIKE_CVHSA_014 (K344R, chain A, )
16: VAR_SPIKE_CVHSA_015 (F360S, chain A, )
17: VAR_SPIKE_CVHSA_016 (R426G, chain A, )
18: VAR_SPIKE_CVHSA_017 (N437D, chain A, )
19: VAR_SPIKE_CVHSA_018 (L472P, chain A, )
20: VAR_SPIKE_CVHSA_019 (N479K, chain A, )
21: VAR_SPIKE_CVHSA_020 (D480G, chain A, )
22: VAR_SPIKE_CVHSA_021 (T487S, chain A, )
23: VAR_SPIKE_CVHSA_022 (F501Y, chain A, )
24: VAR_SPIKE_CVHSA_023 (S577A, chain A, )
25: VAR_SPIKE_CVHSA_024 (D605N, chain A, )
26: VAR_SPIKE_CVHSA_025 (S607P, chain A, )
27: VAR_SPIKE_CVHSA_026 (T608A, chain A, )
28: VAR_SPIKE_CVHSA_027 (A609L, chain A, )
29: VAR_SPIKE_CVHSA_028 (D613E, chain A, )
30: VAR_SPIKE_CVHSA_029 (L665S, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_023082
K
26
R
ACE2_HUMAN
Polymorphism
4646116
B
K
26
R
02
UniProt
VAR_SPIKE_CVHSA_001
*
S
49
L
SPIKE_CVHSA
---
---
A
S
49
L
03
UniProt
VAR_SPIKE_CVHSA_002
*
G
77
D
SPIKE_CVHSA
---
---
A
G
77
D
04
UniProt
VAR_SPIKE_CVHSA_003
*
N
78
D
SPIKE_CVHSA
---
---
A
N
78
D
05
UniProt
VAR_SPIKE_CVHSA_004
*
N
118
S
SPIKE_CVHSA
---
---
A
N
118
S
06
UniProt
VAR_SPIKE_CVHSA_005
*
A
139
V
SPIKE_CVHSA
---
---
A
A
139
V
07
UniProt
VAR_SPIKE_CVHSA_006
*
M
144
L
SPIKE_CVHSA
---
---
A
M
144
L
08
UniProt
VAR_SPIKE_CVHSA_007
*
Q
147
R
SPIKE_CVHSA
---
---
A
Q
147
R
09
UniProt
VAR_SPIKE_CVHSA_008
*
F
193
S
SPIKE_CVHSA
---
---
A
F
193
S
10
UniProt
VAR_SPIKE_CVHSA_009
*
N
227
K
SPIKE_CVHSA
---
---
A
N
227
K
11
UniProt
VAR_SPIKE_CVHSA_010
*
S
239
L
SPIKE_CVHSA
---
---
A
S
239
L
12
UniProt
VAR_SPIKE_CVHSA_011
*
I
244
T
SPIKE_CVHSA
---
---
A
I
244
T
13
UniProt
VAR_SPIKE_CVHSA_012
*
T
261
K
SPIKE_CVHSA
---
---
A
T
261
K
14
UniProt
VAR_SPIKE_CVHSA_013
*
G
311
R
SPIKE_CVHSA
---
---
A
G
311
R
15
UniProt
VAR_SPIKE_CVHSA_014
*
K
344
R
SPIKE_CVHSA
---
---
A
K
344
R
16
UniProt
VAR_SPIKE_CVHSA_015
*
F
360
S
SPIKE_CVHSA
---
---
A
F
360
S
17
UniProt
VAR_SPIKE_CVHSA_016
*
R
426
G
SPIKE_CVHSA
---
---
A
R
426
G
18
UniProt
VAR_SPIKE_CVHSA_017
*
N
437
D
SPIKE_CVHSA
---
---
A
N
437
D
19
UniProt
VAR_SPIKE_CVHSA_018
*
L
472
P
SPIKE_CVHSA
---
---
A
L
472
P
20
UniProt
VAR_SPIKE_CVHSA_019
*
N
479
K
SPIKE_CVHSA
---
---
A
N
479
K
21
UniProt
VAR_SPIKE_CVHSA_020
*
D
480
G
SPIKE_CVHSA
---
---
A
D
480
G
22
UniProt
VAR_SPIKE_CVHSA_021
*
T
487
S
SPIKE_CVHSA
---
---
A
T
487
S
23
UniProt
VAR_SPIKE_CVHSA_022
*
F
501
Y
SPIKE_CVHSA
---
---
A
F
501
Y
24
UniProt
VAR_SPIKE_CVHSA_023
*
S
577
A
SPIKE_CVHSA
---
---
A
S
577
A
25
UniProt
VAR_SPIKE_CVHSA_024
*
D
605
N
SPIKE_CVHSA
---
---
A
D
605
N
26
UniProt
VAR_SPIKE_CVHSA_025
*
S
607
P
SPIKE_CVHSA
---
---
A
S
607
P
27
UniProt
VAR_SPIKE_CVHSA_026
*
T
608
A
SPIKE_CVHSA
---
---
A
T
608
A
28
UniProt
VAR_SPIKE_CVHSA_027
*
A
609
L
SPIKE_CVHSA
---
---
A
A
609
L
29
UniProt
VAR_SPIKE_CVHSA_028
*
D
613
E
SPIKE_CVHSA
---
---
A
D
613
E
30
UniProt
VAR_SPIKE_CVHSA_029
*
L
665
S
SPIKE_CVHSA
---
---
A
L
665
S
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: ZINC_PROTEASE (B:371-380)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ZINC_PROTEASE
PS00142
Neutral zinc metallopeptidases, zinc-binding region signature.
ACE2_HUMAN
371-380
1
B:371-380
[
close PROSITE info
]
Exons
(14, 14)
Info
All Exons
Exon 1.2 (B:19-62)
Exon 1.3b (B:63-115)
Exon 1.4 (B:116-147)
Exon 1.5 (B:147-195)
Exon 1.6 (B:195-232)
Exon 1.7 (B:233-268)
Exon 1.8 (B:268-300)
Exon 1.9 (B:301-357)
Exon 1.10 (B:357-433)
Exon 1.11 (B:433-481)
Exon 1.12 (B:481-514)
Exon 1.13 (B:514-555)
Exon 1.14 (B:555-613)
Exon 1.15 (B:613-615)
View:
Select:
Label:
All Exon Boundaries
01: Boundary -/1.2
02: Boundary 1.2/1.3b
03: Boundary 1.3b/1.4
04: Boundary 1.4/1.5
05: Boundary 1.5/1.6
06: Boundary 1.6/1.7
07: Boundary 1.7/1.8
08: Boundary 1.8/1.9
09: Boundary 1.9/1.10
10: Boundary 1.10/1.11
11: Boundary 1.11/1.12
12: Boundary 1.12/1.13
13: Boundary 1.13/1.14
14: Boundary 1.14/1.15
15: Boundary 1.15/1.16
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2
ENST00000252519
2
ENSE00002198181
X:15619137-15618849
289
ACE2_HUMAN
1-62
62
1
B:19-62
44
1.3b
ENST00000252519
3b
ENSE00000894057
X:15613126-15612968
159
ACE2_HUMAN
63-115
53
1
B:63-115
53
1.4
ENST00000252519
4
ENSE00000894058
X:15610445-15610352
94
ACE2_HUMAN
116-147
32
1
B:116-147
32
1.5
ENST00000252519
5
ENSE00000894059
X:15609979-15609836
144
ACE2_HUMAN
147-195
49
1
B:147-195
49
1.6
ENST00000252519
6
ENSE00000894060
X:15607579-15607467
113
ACE2_HUMAN
195-232
38
1
B:195-232
38
1.7
ENST00000252519
7
ENSE00000894061
X:15605981-15605876
106
ACE2_HUMAN
233-268
36
1
B:233-268
36
1.8
ENST00000252519
8
ENSE00000894062
X:15603695-15603598
98
ACE2_HUMAN
268-300
33
1
B:268-300
33
1.9
ENST00000252519
9
ENSE00000894063
X:15599513-15599344
170
ACE2_HUMAN
301-357
57
1
B:301-357
57
1.10
ENST00000252519
10
ENSE00000894064
X:15596438-15596212
227
ACE2_HUMAN
357-433
77
1
B:357-433
77
1.11
ENST00000252519
11
ENSE00000894065
X:15593933-15593789
145
ACE2_HUMAN
433-481
49
1
B:433-481
49
1.12
ENST00000252519
12
ENSE00000894066
X:15591588-15591490
99
ACE2_HUMAN
481-514
34
1
B:481-514
34
1.13
ENST00000252519
13
ENSE00000894067
X:15590446-15590324
123
ACE2_HUMAN
514-555
42
1
B:514-555
42
1.14
ENST00000252519
14
ENSE00000894068
X:15589919-15589747
173
ACE2_HUMAN
555-613
59
1
B:555-613
59
1.15
ENST00000252519
15
ENSE00000894069
X:15588476-15588418
59
ACE2_HUMAN
613-632
20
1
B:613-615
3
1.16
ENST00000252519
16
ENSE00000894070
X:15585949-15585849
101
ACE2_HUMAN
633-666
34
0
-
-
1.17b
ENST00000252519
17b
ENSE00000894071
X:15584492-15584376
117
ACE2_HUMAN
666-705
40
0
-
-
1.18
ENST00000252519
18
ENSE00000894072
X:15582341-15582147
195
ACE2_HUMAN
705-770
66
0
-
-
1.19c
ENST00000252519
19c
ENSE00001334055
X:15580136-15579156
981
ACE2_HUMAN
770-805
36
0
-
-
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